C2H2 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 scaffold_600374.1 T128315_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.827 1.000
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.820 0.891
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.820 0.891
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.820 0.891
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.798 0.870
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.848
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.848
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.775 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.775 0.674
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_600374.1 C2H2 ZF 89 111
scaffold_600374.1 C2H2 ZF 150 172

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MAC_05681 Metarhizium acridum MAC_05681 N 0.000
PMAA_076190 Penicillium marneffei PMAA_076190 N 0.000
UCRPA7_8834 Togninia minima UCRPA7_8834 N 0.000
UCRPA7_8494 Togninia minima UCRPA7_8494 N 0.000
TSTA_096540 Talaromyces stipitatus TSTA_096540 N 0.000
TRIATDRAFT_54121 Trichoderma atroviride TRIATDRAFT_54121 N 0.000
THITE_2056521 Thielavia terrestris THITE_2056521 N 0.000
PV10_00327 Exophiala mesophila PV10_00327 N 0.000
PMAA_076190 Talaromyces marneffei PMAA_076190 N 0.000
PFICI_13949 Pestalotiopsis fici PFICI_13949 N 0.000
PEX1_002100 Penicillium expansum PEX1_002100 N 0.000
OIDMADRAFT_43237 Oidiodendron maius OIDMADRAFT_43237 N 0.000
MYCTH_44604 Myceliophthora thermophila MYCTH_44604 N 0.000
AOL_s00004g189 Arthrobotrys oligospora AOL_s00004g189 N 0.000
H072_3849 Dactylellina haptotyla H072_3849 N 0.000
GLRG_00869 Colletotrichum graminicola GLRG_00869 N 0.000
FPSE_09241 Fusarium pseudograminearum FPSE_09241 N 0.000
FOXG_01108 Fusarium oxysporum FOXG_01108 N 0.000
FGRRES_00774 Fusarium graminearum FGRRES_00774 N 0.000
DRE_06588 Drechslerella stenobrocha DRE_06588 N 0.000
CTHT_0055390 Chaetomium thermophilum CTHT_0055390 N 0.000
CSUB01_09245 Colletotrichum sublineola CSUB01_09245 N 0.000
Cob_11580 Colletotrichum orbiculare Cob_11580 N 0.000
CH063_08532 Colletotrichum higginsianum CH063_08532 N 0.000
CFIO01_06749 Colletotrichum fioriniae CFIO01_06749 N 0.000