SMAR002904 (Strigamia maritima)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 SMAR002904 T129048_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sob
M03674_2.00 		Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY		 SELEX
Nitta et al.(2015)
sob_1 		0.797 0.922
sob
M03675_2.00 		Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN		 SELEX
Nitta et al.(2015)
sob_2 		0.797 0.922
sob
M06088_2.00 		Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC		 B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892 		0.797 0.922
sob
M06089_2.00 		Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV		 B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892 		0.797 0.922
OSR2
M04521_2.00 		Homo sapiens
NGCTACYGBD
HVCRGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_HT-SELEX 		0.793 0.904
OSR2
M08324_2.00 		Homo sapiens
NBDGCTNCTGN
NCAGNAGCHVN		 ChIP-seq
Schmitges et al.(2016)
Q8N2R0.MEME 		0.793 0.904
OSR2
M08908_2.00 		Homo sapiens
NBHNYWGCTNCTSHDB
VHDSAGNAGCWRNDVN		 Misc
Kulakovskiy et al.(2013)
OSR2_HUMAN.H11MO.0.C 		0.793 0.904
OSR2
M04522_2.00 		Homo sapiens
NGCTACTGND
HNCAGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_Methyl-HT-SELEX 		0.793 0.904
bowl
M03676_2.00 		Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC		 SELEX
Nitta et al.(2015)
bowl_1 		0.790 0.913
bowl
M03677_2.00 		Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN		 SELEX
Nitta et al.(2015)
bowl_2 		0.790 0.913
bowl
M06090_2.00 		Drosophila melanogaster
RCTWCYGK
MCRGWAGY		 B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893 		0.790 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMAR002904-PA C2H2 ZF 197 219
SMAR002904-PA C2H2 ZF 225 247
SMAR002904-PA C2H2 ZF 253 275
SMAR002904-PA C2H2 ZF 281 303
SMAR002904-PA C2H2 ZF 309 331

Links

Other C2H2 ZF family TFs
Other Strigamia maritima TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0248s0020 Capsella grandiflora Cagra.0248s0020 N 0.000
LjSGA_035337.1 Lotus japonicus LjSGA_035337.1 N 0.000
Thhalv10003624m.g Eutrema salsugineum Thhalv10003624m.g N 0.000
SapurV1A.0841s0060 Salix purpurea SapurV1A.0841s0060 N 0.000
MDP0000574910 Malus domestica MDP0000574910 N 0.000
MDP0000313526 Malus domestica MDP0000313526 N 0.000
Lus10016758.g Linum usitatissimum Lus10016758.g N 0.000
Gorai.001G059600 Gossypium raimondii Gorai.001G059600 N 0.000
gene06358-v1.0-hybrid Fragaria vesca gene06358-v1.0-hybrid N 0.000
Carubv10027519m.g Capsella rubella Carubv10027519m.g N 0.000
AMTR_s00009p00241540 Amborella trichopoda AMTR_s00009p00241540 N 0.000
Bostr.0568s0468 Boechera stricta Bostr.0568s0468 N 0.000
30147.m014528 Ricinus communis 30147.m014528 N 0.000
Pm024489 Prunus mume Pm024489 N 0.000
emb2746 Vitis vinifera VIT_17s0000g01640 N 0.000
PRUPE_ppa001238mg Prunus persica PRUPE_ppa001238mg N 0.000
POPTR_0012s09780 Populus trichocarpa POPTR_0012s09780 N 0.000
Bra038629 Brassica rapa Bra038629 N 0.000
Bo3g103450 Brassica oleracea Bo3g103450 N 0.000
emb2746 Arabidopsis thaliana AT5G63420 N 0.000