SPU_018909 (Strongylocentrotus purpuratus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 SPU_018909 T129701_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.821 0.921
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.821 0.921
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.821 0.921
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.801 0.904
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.801 0.904
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SPU_018909-tr C2H2 ZF 248 269
SPU_018909-tr C2H2 ZF 275 297
SPU_018909-tr C2H2 ZF 633 655
SPU_018909-tr C2H2 ZF 661 683
SPU_018909-tr C2H2 ZF 691 714

Links

Other C2H2 ZF family TFs
Other Strongylocentrotus purpuratus TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSOCUG00000024296 Oryctolagus cuniculus ENSOCUG00000024296 I 0.799
im:7142702 Takifugu rubripes ENSTRUG00000018074 I 0.801
ENSFALG00000002563 Ficedula albicollis ENSFALG00000002563 N 0.000
ENSMPUG00000003031 Mustela putorius furo ENSMPUG00000003031 N 0.000
bcl11aa Tetraodon nigroviridis ENSTNIG00000004033 N 0.000
ENSXMAG00000004749 Xiphophorus maculatus ENSXMAG00000004749 N 0.000