Alligator_sinensis_CCG007476.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG007476.1 T133204_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.824 0.986
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.824 0.986
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.824 0.986
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.824 0.986
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.824 0.986
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.824 0.986
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.824 0.986
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.824 0.986
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.822 0.978
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.787 0.978
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.784 0.891
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.784 0.891
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.784 0.891
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.784 0.891
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.784 0.891
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.784 0.891
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.784 0.891
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.784 0.891
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.784 0.891
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.774 0.884
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.773 0.841
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG007476.1 C2H2 ZF 212 235
Alligator_sinensis_CCG007476.1 C2H2 ZF 241 263
Alligator_sinensis_CCG007476.1 C2H2 ZF 269 291
Alligator_sinensis_CCG007476.1 C2H2 ZF 297 319
Alligator_sinensis_CCG007476.1 C2H2 ZF 325 347
Alligator_sinensis_CCG007476.1 C2H2 ZF 353 376

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSOARG00000015487 Ovis aries ENSOARG00000015487 N
Myotis_brandtii_ZBTB38_10028248 Myotis brandtii Myotis_brandtii_ZBTB38_10028248 N
ENSP00000406955-D1 Bos grunniens ENSP00000406955-D1 N
ENSP00000372635 Macaca fascicularis ENSP00000372635 N
ZBTB38 Vicugna pacos ENSVPAG00000007353 N
ENSTSYG00000009951 Tarsius syrichta ENSTSYG00000009951 N
ENSSTOG00000025333 Ictidomys tridecemlineatus ENSSTOG00000025333 N
ZBTB38 Sus scrofa ENSSSCG00000022073 N
ENSSSCG00000021674 Sus scrofa ENSSSCG00000021674 N
Zbtb38 Rattus norvegicus ENSRNOG00000012386 N
ZBTB38 Pteropus vampyrus ENSPVAG00000017499 N
ZBTB38 Pan troglodytes ENSPTRG00000030108 N
ENSPANG00000018989 Papio anubis ENSPANG00000018989 N
ZBTB38 Ochotona princeps ENSOPRG00000009539 N
ZBTB38 Otolemur garnettii ENSOGAG00000009394 N
ZBTB38 Bos taurus ENSBTAG00000040061 N
ENSNLEG00000004569 Nomascus leucogenys ENSNLEG00000004569 N
Zbtb38 Mus musculus ENSMUSG00000040433 N
ENSMPUG00000019344 Mustela putorius furo ENSMPUG00000019344 N
ZBTB38 Macaca mulatta ENSMMUG00000031526 N
ZBTB38 Myotis lucifugus ENSMLUG00000012512 N
ZBTB38 Gorilla gorilla ENSGGOG00000023008 N
ZBTB38 Homo sapiens ENSG00000177311 N
ZBTB38 Felis catus ENSFCAG00000030922 N
ZBTB38 Erinaceus europaeus ENSEEUG00000000264 N
ENSDORG00000005705 Dipodomys ordii ENSDORG00000005705 N
ZBTB38 Dasypus novemcinctus ENSDNOG00000037832 N
ENSCSAG00000018910 Chlorocebus sabaeus ENSCSAG00000018910 N
ZBTB38 Callithrix jacchus ENSCJAG00000031471 N
ZBTB38 Canis familiaris ENSCAFG00000007664 N