Alligator_sinensis_CCG009677.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG009677.1 T133250_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zfp410
M00140_2.00 		Mus musculus
CYATCCCA
TGGGATRG		 PBM
Badis et al.(2009)
Zfp410_3034 		0.804 0.957
ZNF410
M02882_2.00 		Homo sapiens
KVNTATTATGGGATGKN
NMCATCCCATAATANBM		 SELEX
Jolma et al.(2013)
ZNF410_1 		0.804 0.957
ZNF410
M04435_2.00 		Homo sapiens
NTATTATGGGNTRB
VYANCCCATAATAN		 SELEX
Yin et al.(2017)
ZNF410_eDBD_HT-SELEX 		0.804 0.957
ZNF410
M04436_2.00 		Homo sapiens
NTATTATGGGHTRB
VYADCCCATAATAN		 SELEX
Yin et al.(2017)
ZNF410_eDBD_Methyl-HT-SELEX 		0.804 0.957
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG009677.1 C2H2 ZF 169 193
Alligator_sinensis_CCG009677.1 C2H2 ZF 199 223
Alligator_sinensis_CCG009677.1 C2H2 ZF 229 253
Alligator_sinensis_CCG009677.1 C2H2 ZF 259 283
Alligator_sinensis_CCG009677.1 C2H2 ZF 289 312

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_119116 Agaricus bisporus AGABI2DRAFT_119116 N
GALMADRAFT_24194 Galerina marginata GALMADRAFT_24194 N
M413DRAFT_30215 Hebeloma cylindrosporum M413DRAFT_30215 N
M413DRAFT_43160 Hebeloma cylindrosporum M413DRAFT_43160 N
Moror_11160 Moniliophthora roreri Moror_11160 N
PILCRDRAFT_56090 Piloderma croceum PILCRDRAFT_56090 N
PILCRDRAFT_70898 Piloderma croceum PILCRDRAFT_70898 N
PLEOSDRAFT_1026763 Pleurotus ostreatus PLEOSDRAFT_1026763 N
PLEOSDRAFT_1037122 Pleurotus ostreatus PLEOSDRAFT_1037122 N