Cmyd_10012301 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10012301 T134370_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB18
M02916_2.00 		Homo sapiens
VMACATCTGGAWN
NWTCCAGATGTKB		 SELEX
Jolma et al.(2013)
ZNF238_1 		0.759 0.921
ZBTB18
M02917_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Jolma et al.(2013)
ZNF238_2 		0.759 0.921
ZBTB18
M04585_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_HT-SELEX 		0.759 0.921
ZBTB18
M08350_2.00 		Homo sapiens
MRCAKCTGG
CCAGMTGYK		 ChIP-seq
Schmitges et al.(2016)
Q99592_2-4.RCADE 		0.759 0.921
ZBTB18
M08928_2.00 		Homo sapiens
VMRCAKCTGGV
BCCAGMTGYKB		 Misc
Kulakovskiy et al.(2013)
ZBT18_HUMAN.H11MO.0.C 		0.759 0.921
ZBTB18
M10282_2.00 		Homo sapiens
NNMACATCTGGM
KCCAGATGTKNN		 Transfac
Matys et al.(2006)
V$RP58_01 		0.759 0.921
ZBTB18
M10283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RP58_Q3 		0.759 0.921
ZBTB18
M04586_2.00 		Homo sapiens
NMACATCTGBHNN
NNDVCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_Methyl-HT-SELEX 		0.759 0.921
ZBTB18
M08257_2.00 		Homo sapiens
NMGCAGCTGCKB
VMGCAGCTGCKN		 ChIP-seq
Najafabadi et al.(2015b)
ZNF238 		0.759 0.901
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10012301 C2H2 ZF 348 370
Cmyd_10012301 C2H2 ZF 389 410
Cmyd_10012301 C2H2 ZF 416 438
Cmyd_10012301 C2H2 ZF 446 467

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CPAG_00713 Candida parapsilosis CPAG_00713 N 0.000
PGUG_05893 Candida guilliermondii PGUG_05893 N 0.000
CaO19.11930 Candida albicans CaO19.11930 N 0.000
CaO19.4450 Candida albicans CaO19.4450 N 0.000
CD36_06700 Candida dubliniensis CD36_06700 N 0.000
CORT_0A07360 Candida orthopsilosis CORT_0A07360 N 0.000
G210_4155 Candida maltosa G210_4155 N 0.000
GNLVRS01_PISO0M07624g Millerozyma farinosa GNLVRS01_PISO0M07624g N 0.000
GNLVRS01_PISO0N07779g Millerozyma farinosa GNLVRS01_PISO0N07779g N 0.000
LELG_00882 Lodderomyces elongisporus LELG_00882 N 0.000
PGUG_05893 Meyerozyma guilliermondii PGUG_05893 N 0.000
PICST_68007 Scheffersomyces stipitis PICST_68007 N 0.000
SPAPADRAFT_53489 Spathaspora passalidarum SPAPADRAFT_53489 N 0.000
estExt_fgenesh1_pg.C_chr_6.10108 Pichia stipitis estExt_fgenesh1_pg.C_chr_6.10108 N 0.000