Cmyd_10014556 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10014556 T134396_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Zfp410
M00140_2.00 		Mus musculus
CYATCCCA
TGGGATRG		 PBM
Badis et al.(2009)
Zfp410_3034 		0.801 0.948
ZNF410
M02882_2.00 		Homo sapiens
KVNTATTATGGGATGKN
NMCATCCCATAATANBM		 SELEX
Jolma et al.(2013)
ZNF410_1 		0.801 0.948
ZNF410
M04435_2.00 		Homo sapiens
NTATTATGGGNTRB
VYANCCCATAATAN		 SELEX
Yin et al.(2017)
ZNF410_eDBD_HT-SELEX 		0.801 0.948
ZNF410
M04436_2.00 		Homo sapiens
NTATTATGGGHTRB
VYADCCCATAATAN		 SELEX
Yin et al.(2017)
ZNF410_eDBD_Methyl-HT-SELEX 		0.801 0.948
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10014556 C2H2 ZF 277 301
Cmyd_10014556 C2H2 ZF 307 331
Cmyd_10014556 C2H2 ZF 337 361
Cmyd_10014556 C2H2 ZF 367 391
Cmyd_10014556 C2H2 ZF 397 420

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DAPPUDRAFT_114109 Daphnia pulex DAPPUDRAFT_114109 N