Cmyd_10015871 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10015871 T134420_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IKZF3
M08320_2.00 		Homo sapiens
TTCCCNNSB
VSNNGGGAA		 ChIP-seq
Schmitges et al.(2016)
Q9UKT9_2-4.RCADE 		0.812 0.967
IKZF1
M08939_2.00 		Homo sapiens
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_HUMAN.H11MO.0.C 		0.790 0.868
Ikzf1
M08969_2.00 		Mus musculus
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_MOUSE.H11MO.0.C 		0.790 0.868
IKZF1
M10301_2.00 		Homo sapiens
NHBYGGGAAYRYB
VRYRTTCCCRVDN		 Transfac
Matys et al.(2006)
V$IK1_01 		0.790 0.868
IKZF1
M10302_2.00 		Homo sapiens
BNNWTCCCRNNN
NNNYGGGAWNNV		 Transfac
Matys et al.(2006)
V$IK2_01 		0.790 0.868
IKZF1
M10303_2.00 		Homo sapiens
KNYHGGGAAYRYY
RRYRTTCCCDRNM		 Transfac
Matys et al.(2006)
V$IK3_01 		0.790 0.868
IKZF1
M10304_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5_01 		0.790 0.868
IKZF1
M10305_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5 		0.790 0.868
IKZF1
M10306_2.00 		Homo sapiens
YYTCCCARA
TYTGGGARR		 Transfac
Matys et al.(2006)
V$LYF1_01 		0.790 0.868
IKZF2
M10105_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_01 		0.776 0.857
IKZF2
M10106_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_02 		0.776 0.857
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10015871 C2H2 ZF 205 227
Cmyd_10015871 C2H2 ZF 233 255
Cmyd_10015871 C2H2 ZF 261 283
Cmyd_10015871 C2H2 ZF 289 310

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACUA002672 Anopheles culicifacies ACUA002672 N 0.000
ASTEI02247 Anopheles stephensi ASTEI02247 N 0.000
ASIS018029 Anopheles sinensis ASIS018029 N 0.000
AQUA011207 Anopheles quadriannulatus AQUA011207 N 0.000
AMIN010178 Anopheles minimus AMIN010178 N 0.000
AMEM006050 Anopheles merus AMEM006050 N 0.000
AMEC018494 Anopheles melas AMEC018494 N 0.000
AFUN004883 Anopheles funestus AFUN004883 N 0.000
AFAF013492 Anopheles farauti AFAF013492 N 0.000
AEPI006442 Anopheles epiroticus AEPI006442 N 0.000
ADIR006896 Anopheles dirus ADIR006896 N 0.000
CpipJ_CPIJ014938 Culex pipiens CpipJ_CPIJ014938 N 0.000
ACOM038868 Anopheles coluzzii ACOM038868 N 0.000
ACHR008375 Anopheles christyi ACHR008375 N 0.000
AATE014920 Anopheles atroparvus AATE014920 N 0.000
AARA005744 Anopheles arabiensis AARA005744 N 0.000
AALB005830 Anopheles albimanus AALB005830 N 0.000
TC002494 Tribolium castaneum TC002494 N 0.000
CPIJ014938 Culex quinquefasciatus CPIJ014938 N 0.000
CYC Anopheles gambiae AGAP005655 N 0.000
ADAC003147 Anopheles darlingi ADAC003147 N 0.000
AAEL002049 Aedes aegypti AAEL002049 N 0.000