Cmyd_10016351 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10016351 T134425_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBTB18
M02916_2.00 		Homo sapiens
VMACATCTGGAWN
NWTCCAGATGTKB		 SELEX
Jolma et al.(2013)
ZNF238_1 		0.827 1.000
ZBTB18
M02917_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Jolma et al.(2013)
ZNF238_2 		0.827 1.000
ZBTB18
M04585_2.00 		Homo sapiens
NMACATCTGGMHN
NDKCCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_HT-SELEX 		0.827 1.000
ZBTB18
M08350_2.00 		Homo sapiens
MRCAKCTGG
CCAGMTGYK		 ChIP-seq
Schmitges et al.(2016)
Q99592_2-4.RCADE 		0.827 1.000
ZBTB18
M08257_2.00 		Homo sapiens
NMGCAGCTGCKB
VMGCAGCTGCKN		 ChIP-seq
Najafabadi et al.(2015b)
ZNF238 		0.827 1.000
ZBTB18
M08928_2.00 		Homo sapiens
VMRCAKCTGGV
BCCAGMTGYKB		 Misc
Kulakovskiy et al.(2013)
ZBT18_HUMAN.H11MO.0.C 		0.827 1.000
ZBTB18
M10282_2.00 		Homo sapiens
NNMACATCTGGM
KCCAGATGTKNN		 Transfac
Matys et al.(2006)
V$RP58_01 		0.827 1.000
ZBTB18
M10283_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RP58_Q3 		0.827 1.000
ZBTB18
M04586_2.00 		Homo sapiens
NMACATCTGBHNN
NNDVCAGATGTKN		 SELEX
Yin et al.(2017)
ZBTB18_eDBD_Methyl-HT-SELEX 		0.827 1.000
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10016351 C2H2 ZF 453 475
Cmyd_10016351 C2H2 ZF 494 515
Cmyd_10016351 C2H2 ZF 521 543
Cmyd_10016351 C2H2 ZF 549 572

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
THITE_2117609 Thielavia terrestris THITE_2117609 N
MGG_08015 Magnaporthe oryzae MGG_08015 N
MGU_07938 Metarhizium guizhouense MGU_07938 N
MYCTH_71014 Myceliophthora thermophila MYCTH_71014 N
NechaG101763 Fusarium solani NechaG101763 N
NEUTE1DRAFT_147899 Neurospora tetrasperma NEUTE1DRAFT_147899 N
PFICI_13633 Pestalotiopsis fici PFICI_13633 N
S40285_07530 Stachybotrys chlorohalonata S40285_07530 N
S40288_02304 Stachybotrys chartarum S40288_02304 N
SAPIO_CDS1330 Scedosporium apiospermum SAPIO_CDS1330 N
SMAC_06370 Sordaria macrospora SMAC_06370 N
SPBR_03062 Sporothrix brasiliensis SPBR_03062 N
MBR_08628 Metarhizium brunneum MBR_08628 N
TRIATDRAFT_297925 Trichoderma atroviride TRIATDRAFT_297925 N
TRIREDRAFT_44290 Trichoderma reesei TRIREDRAFT_44290 N
TRIVIDRAFT_71606 Trichoderma virens TRIVIDRAFT_71606 N
UCREL1_9736 Eutypa lata UCREL1_9736 N
UCRPA7_8290 Togninia minima UCRPA7_8290 N
UV8b_6674 Ustilaginoidea virens UV8b_6674 N
VHEMI09843 Torrubiella hemipterigena VHEMI09843 N
X797_008201 Metarhizium robertsii X797_008201 N
estExt_fgenesh1_pg.C_sca_43_chr10_1_00099 Nectria haematococca estExt_fgenesh1_pg.C_sca_43_chr10_1_00099 N
estExt_fgenesh3_pm.C_80304 Neurospora discreta estExt_fgenesh3_pm.C_80304 N
NCU06145 Neurospora crassa NCU06145 N
FGRRES_04889 Fusarium graminearum FGRRES_04889 N
CFIO01_11721 Colletotrichum fioriniae CFIO01_11721 N
CGGC5_10881 Colletotrichum gloeosporioides CGGC5_10881 N
CH063_01255 Colletotrichum higginsianum CH063_01255 N
CHGG_09841 Chaetomium globosum CHGG_09841 N
CMQ_1562 Grosmannia clavigera CMQ_1562 N
Cob_07208 Colletotrichum orbiculare Cob_07208 N
CPUR_07536 Claviceps purpurea CPUR_07536 N
CSUB01_01314 Colletotrichum sublineola CSUB01_01314 N
CTHT_0018200 Chaetomium thermophilum CTHT_0018200 N
F503_07557 Ophiostoma piceae uamh F503_07557 N
FFUJ_03890 Fusarium fujikuroi FFUJ_03890 N
ACRE_061680 Acremonium chrysogenum ACRE_061680 N
FOXG_05735 Fusarium oxysporum FOXG_05735 N
FPSE_03992 Fusarium pseudograminearum FPSE_03992 N
FVEG_03610 Fusarium verticillioides FVEG_03610 N
GGTG_03418 Gaeumannomyces graminis GGTG_03418 N
GLRG_08580 Colletotrichum graminicola GLRG_08580 N
HMPREF1624_02947 Sporothrix schenckii HMPREF1624_02947 N
MAC_06595 Metarhizium acridum MAC_06595 N
MAJ_09938 Metarhizium majus MAJ_09938 N
MAM_07567 Metarhizium album MAM_07567 N
MANI_002902 Metarhizium anisopliae MANI_002902 N
MAPG_01366 Magnaporthe poae MAPG_01366 N