Cmyd_10017688 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10017688 T134460_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Glis2
M00129_2.00 		Mus musculus
NKACCCCYYNN
NNRRGGGGTMN		 PBM
Badis et al.(2009)
Glis2_1757 		0.811 0.971
GLIS2
M02887_2.00 		Homo sapiens
KACCCCCCRCRDHG
CDHYGYGGGGGGTM		 SELEX
Jolma et al.(2013)
GLIS2_1 		0.811 0.957
GLIS2
M04449_2.00 		Homo sapiens
RCCCCCCRCRWHGH
DCDWYGYGGGGGGY		 SELEX
Yin et al.(2017)
GLIS2_eDBD_HT-SELEX 		0.811 0.957
GLIS2
M04450_2.00 		Homo sapiens
DCWHYGYDGGGGGT
ACCCCCHRCRDWGH		 SELEX
Yin et al.(2017)
GLIS2_eDBD_Methyl-HT-SELEX 		0.811 0.957
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10017688 C2H2 ZF 177 199
Cmyd_10017688 C2H2 ZF 205 229
Cmyd_10017688 C2H2 ZF 235 259

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

45 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BAUCODRAFT_21663 Baudoinia compniacensis BAUCODRAFT_21663 N
DOTSEDRAFT_74725 Dothistroma septosporum DOTSEDRAFT_74725 N
MYCFIDRAFT_96026 Pseudocercospora fijiensis MYCFIDRAFT_96026 N
Mycgr3G76636 Zymoseptoria tritici Mycgr3G76636 N
estExt_fgenesh1_pg.C_60133 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_60133 N
estExt_Genewise1Plus.C_chr_110062 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_110062 N