Gfo_R006733 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R006733 T135746_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL11B
M04453_2.00 		Homo sapiens
GTGAACGBNDNNVCTACAC
GTGTAGBNNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_HT-SELEX 		0.827 1.000
BCL11B
M04454_2.00 		Homo sapiens
GTGAACGBNDNHVCTACAC
GTGTAGBDNHNVCGTTCAC		 SELEX
Yin et al.(2017)
BCL11B_eDBD_Methyl-HT-SELEX 		0.827 1.000
BCL11A
M07926_2.00 		Homo sapiens
BTYTCASTTCCYYHH
DDRRGGAASTGARAV		 ChIP-seq
Gerstein et al.(2012)
GM12878_BCL11A_HudsonAlpha 		0.806 0.947
BCL11A
M08881_2.00 		Homo sapiens
BHBYCABTTCCYBHNYN
NRNDVRGGAAVTGRVDV		 Misc
Kulakovskiy et al.(2013)
BC11A_HUMAN.H11MO.0.A 		0.806 0.947
BCL11A
M10187_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL11A_02 		0.806 0.947
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R006733 C2H2 ZF 429 450
Gfo_R006733 C2H2 ZF 456 478
Gfo_R006733 C2H2 ZF 786 808
Gfo_R006733 C2H2 ZF 814 836
Gfo_R006733 C2H2 ZF 844 867

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_23624 Ancylostoma caninum ANCCAN_23624 I
DME_0000841401 Dracunculus medinensis DME_0000841401 I
DICVIV_00921 Dictyocaulus viviparus DICVIV_00921 I
D918_02805 Trichuris suis D918_02805 I
D917_07791 Trichinella nativa D917_07791 I
CGOC_0000822101 Cylicostephanus goldi CGOC_0000822101 I
ASU_00242 Ascaris suum ASU_00242 I
ANCDUO_15205 Ancylostoma duodenale ANCDUO_15205 I
ANCCEY_02877 Ancylostoma ceylanicum ANCCEY_02877 I
ANCCAN_24706 Ancylostoma caninum ANCCAN_24706 I
EVEC_0001110501 Enterobius vermicularis EVEC_0001110501 I
ACOC_0000703501 Angiostrongylus costaricensis ACOC_0000703501 I
PPAI010076 Phlebotomus papatasi PPAI010076 I
ASTEI07078 Anopheles stephensi ASTEI07078 I
AQUA008561 Anopheles quadriannulatus AQUA008561 I
AMIN002618 Anopheles minimus AMIN002618 I
AEPI001687 Anopheles epiroticus AEPI001687 I
ACUA003826 Anopheles culicifacies ACUA003826 I
ACHR007729 Anopheles christyi ACHR007729 I
NECAME_07738 Necator americanus NECAME_07738 I
TTRE_0000134301 Trichuris trichiura TTRE_0000134301 I
TMUE_s0183000500 Trichuris muris TMUE_s0183000500 I
SVUK_0000405601 Strongylus vulgaris SVUK_0000405601 I
SVE_0442300 Strongyloides venezuelensis SVE_0442300 I
SSTP_0000359900 Strongyloides stercoralis SSTP_0000359900 I
SPAL_0001624500 Strongyloides papillosus SPAL_0001624500 I
PTRK_0001568700 Parastrongyloides trichosuri PTRK_0001568700 I
nOo.2.0.1.g10265 Onchocerca ochengi nOo.2.0.1.g10265 I
nLs.2.1.2.g05095 Litomosoides sigmodontis nLs.2.1.2.g05095 I
ACYPI001696 Acyrthosiphon pisum ACYPI001696 I
NBR_0000066801 Nippostrongylus brasiliensis NBR_0000066801 I
nAv.1.0.1.g04749 Acanthocheilonema viteae nAv.1.0.1.g04749 I
L898_g8569 Steinernema monticolum L898_g8569 I
L893_g28279 Steinernema glaseri L893_g28279 I
L892_g25141 Steinernema scapterisci L892_g25141 I
L889_g22574 Steinernema feltiae L889_g22574 I
L596_g9976 Steinernema carpocapsae L596_g9976 I
HCOI02128500 Haemonchus contortus HCOI02128500 I
AARA009757 Anopheles arabiensis AARA009757 I
SINV18378 Solenopsis invicta SINV18378 I
EFV53283 Trichinella spiralis EFV53283 I
Bm5024 Brugia malayi Bm5024 I
YQE_10516 Dendroctonus ponderosae YQE_10516 I
CBG22984 Caenorhabditis briggsae CBG22984 I
DAPPUDRAFT_290533 Daphnia pulex DAPPUDRAFT_290533 I
PHUM334550 Pediculus humanus PHUM334550 I
Cflo_00868--XP_392355.3_APIME Camponotus floridanus Cflo_00868--XP_392355.3_APIME I
CRE23850 Caenorhabditis remanei CRE23850 I
GA14403 Drosophila pseudoobscura FBgn0074431 N
GK11290 Drosophila willistoni FBgn0213301 N
GF16857 Drosophila ananassae FBgn0093877 N
GG18089 Drosophila erecta FBgn0110306 N
GH21437 Drosophila grimshawi FBgn0128899 N
GI22696 Drosophila mojavensis FBgn0145423 N
GM23939 Drosophila sechellia FBgn0178804 N
ECPE_0000538001 Echinostoma caproni ECPE_0000538001 N
ECANG7_03959 Echinococcus canadensis ECANG7_03959 N
ISCW008733 Ixodes scapularis ISCW008733 N
pros Drosophila virilis FBgn0028753 N
pros Drosophila simulans FBgn0025030 N
pros Drosophila melanogaster FBgn0004595 N
nRc.2.0.1.g04054 Romanomermis culicivorax nRc.2.0.1.g04054 N
nRc.2.0.1.g38267 Romanomermis culicivorax nRc.2.0.1.g38267 N
CGI_10022026 Crassostrea gigas CGI_10022026 N
CapteG2449 Capitella teleta CapteG2449 N
BGIBMGA005085 Bombyx mori BGIBMGA005085 N
T265_07444 Opisthorchis viverrini T265_07444 N
AGAP004052 Anopheles gambiae AGAP004052 N
TsM_000259000 Taenia solium TsM_000259000 N
AAEL002769 Aedes aegypti AAEL002769 N
AQUA008560 Anopheles quadriannulatus AQUA008560 N
AARA009758 Anopheles arabiensis AARA009758 N
AATE019368 Anopheles atroparvus AATE019368 N
ACHR005874 Anopheles christyi ACHR005874 N
LDEC004085 Leptinotarsa decemlineata LDEC004085 N
ACOM033416 Anopheles coluzzii ACOM033416 N
CLEC000910 Cimex lectularius CLEC000910 N
AEPI001686 Anopheles epiroticus AEPI001686 N
Ocbimv22022378m.g Octopus bimaculoides Ocbimv22022378m.g N
AFAF012033 Anopheles farauti AFAF012033 N
AMEC020934 Anopheles melas AMEC020934 N
AMEM000031 Anopheles merus AMEM000031 N
AMIN002617 Anopheles minimus AMIN002617 N
GE26090 Drosophila yakuba FBgn0243130 N
tetur02g12740 Tetranychus urticae tetur02g12740 N
ASTEI07079 Anopheles stephensi ASTEI07079 N
LLOJ001671 Lutzomyia longipalpis LLOJ001671 N
MDOA008728 Musca domestica MDOA008728 N
Smp_162760 Schistosoma mansoni Smp_162760 N
SMAR007154 Strigamia maritima SMAR007154 N
RPRC009271 Rhodnius prolixus RPRC009271 N
NV15108 Nasonia vitripennis NV15108 N
LotgiG183824 Lottia gigantea LotgiG183824 N
KGM_10139 Danaus plexippus KGM_10139 N
csin108622 Clonorchis sinensis csin108622 N
GB55033 Apis mellifera GB55033 N