Gfo_R016268 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R016268 T135892_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IKZF3
M08320_2.00 		Homo sapiens
TTCCCNNSB
VSNNGGGAA		 ChIP-seq
Schmitges et al.(2016)
Q9UKT9_2-4.RCADE 		0.809 0.956
IKZF1
M08939_2.00 		Homo sapiens
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_HUMAN.H11MO.0.C 		0.793 0.879
Ikzf1
M08969_2.00 		Mus musculus
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_MOUSE.H11MO.0.C 		0.793 0.879
IKZF1
M10301_2.00 		Homo sapiens
NHBYGGGAAYRYB
VRYRTTCCCRVDN		 Transfac
Matys et al.(2006)
V$IK1_01 		0.793 0.879
IKZF1
M10302_2.00 		Homo sapiens
BNNWTCCCRNNN
NNNYGGGAWNNV		 Transfac
Matys et al.(2006)
V$IK2_01 		0.793 0.879
IKZF1
M10303_2.00 		Homo sapiens
KNYHGGGAAYRYY
RRYRTTCCCDRNM		 Transfac
Matys et al.(2006)
V$IK3_01 		0.793 0.879
IKZF1
M10304_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5_01 		0.793 0.879
IKZF1
M10305_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5 		0.793 0.879
IKZF1
M10306_2.00 		Homo sapiens
YYTCCCARA
TYTGGGARR		 Transfac
Matys et al.(2006)
V$LYF1_01 		0.793 0.879
IKZF2
M10105_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_01 		0.773 0.846
IKZF2
M10106_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_02 		0.773 0.846
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R016268 C2H2 ZF 8 30
Gfo_R016268 C2H2 ZF 36 58
Gfo_R016268 C2H2 ZF 64 86
Gfo_R016268 C2H2 ZF 92 113

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
POPTR_0012s02040 Populus trichocarpa POPTR_0012s02040 N
POPTR_0012s02070 Populus trichocarpa POPTR_0012s02070 N
SapurV1A.0174s0200 Salix purpurea SapurV1A.0174s0200 N
SapurV1A.0174s0210 Salix purpurea SapurV1A.0174s0210 N
SapurV1A.4391s0010 Salix purpurea SapurV1A.4391s0010 N