Myotis_brandtii_PRDM4_10020406 (Myotis brandtii)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Myotis_brandtii_PRDM4_10020406 T136099_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.827 0.993
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.827 0.993
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.827 0.993
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.827 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Myotis_brandtii_PRDM4_10020406 C2H2 ZF 590 612
Myotis_brandtii_PRDM4_10020406 C2H2 ZF 618 640
Myotis_brandtii_PRDM4_10020406 C2H2 ZF 646 668
Myotis_brandtii_PRDM4_10020406 C2H2 ZF 674 696
Myotis_brandtii_PRDM4_10020406 C2H2 ZF 702 724
Myotis_brandtii_PRDM4_10020406 C2H2 ZF 730 751

Links

Other C2H2 ZF family TFs
Other Myotis brandtii TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BZIP50 Oryza sativa OS06G0622700 N
LjSGA_008446.2 Lotus japonicus LjSGA_008446.2 N
Pavir.Db00825 Panicum virgatum Pavir.Db00825 N
Pavir.Da00593 Panicum virgatum Pavir.Da00593 N
Lus10040069.g Linum usitatissimum Lus10040069.g N
Gorai.009G309200 Gossypium raimondii Gorai.009G309200 N
Cucsa.272470 Cucumis sativus Cucsa.272470 N
30170.m014243 Ricinus communis 30170.m014243 N
Cla023847 Citrullus lanatus Cla023847 N
ATBZIP60 Vitis vinifera VIT_18s0122g00500 N
TRIUR3_33804 Triticum urartu TRIUR3_33804 N
Traes_7DL_3CE000E38 Triticum aestivum Traes_7DL_3CE000E38 N
Traes_7AL_25850F96F Triticum aestivum Traes_7AL_25850F96F N
Si017847m.g Setaria italica Si017847m.g N
Sb10g024430 Sorghum bicolor Sb10g024430 N
Sb04g006400 Sorghum bicolor Sb04g006400 N
BGIOSGA023284 Oryza indica BGIOSGA023284 N
ORUFI06G22890 Oryza rufipogon ORUFI06G22890 N
OPUNC06G19380 Oryza punctata OPUNC06G19380 N
ONIVA06G25200 Oryza nivara ONIVA06G25200 N
OMERI01G31300 Oryza meridionalis OMERI01G31300 N
OGLUM06G22450 Oryza glumaepatula OGLUM06G22450 N
OBART06G21250 Oryza barthii OBART06G21250 N
OB06G29280 Oryza brachyantha OB06G29280 N
MTR_1g050502 Medicago truncatula MTR_1g050502 N
MLOC_22013 Hordeum vulgare MLOC_22013 N
LPERR06G17810 Leersia perrieri LPERR06G17810 N
GSMUA_Achr1G19750_001 Musa acuminata GSMUA_Achr1G19750_001 N
GRMZM2G025812 Zea mays GRMZM2G025812 N
F775_26495 Aegilops tauschii F775_26495 N
BRADI1G35790 Brachypodium distachyon BRADI1G35790 N