Pm025274 (Prunus mume)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pm025274 T136825_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.806 0.952
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.806 0.952
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm025274 C2H2 ZF 132 153
Pm025274 C2H2 ZF 153 178

Links

Other C2H2 ZF family TFs
Other Prunus mume TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MXD4 Callithrix jacchus ENSCJAG00000014432 N 0.000
MXD4 Dasypus novemcinctus ENSDNOG00000047281 N 0.000
ENSMMUG00000001160 Macaca mulatta ENSMMUG00000001160 N 0.000
Mxd4 Mus musculus ENSMUSG00000037235 N 0.000
Mxd4 Rattus norvegicus ENSRNOG00000015033 N 0.000
MXD4 Sus scrofa ENSSSCG00000008687 N 0.000
ENSSTOG00000028770 Ictidomys tridecemlineatus ENSSTOG00000028770 N 0.000
mxd1 Takifugu rubripes ENSTRUG00000014843 N 0.000
Myotis_brandtii_MXD4_10021599 Myotis brandtii Myotis_brandtii_MXD4_10021599 N 0.000