Pvit_13083 (Pogona vitticeps)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pvit_13083 T137353_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IKZF2
M10105_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_01 		0.827 1.000
IKZF2
M10106_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HELIOSA_02 		0.827 1.000
Ikzf1
M08969_2.00 		Mus musculus
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_MOUSE.H11MO.0.C 		0.804 0.924
IKZF1
M08939_2.00 		Homo sapiens
HYTCCCAV
BTGGGARD		 Misc
Kulakovskiy et al.(2013)
IKZF1_HUMAN.H11MO.0.C 		0.804 0.913
IKZF1
M10301_2.00 		Homo sapiens
NHBYGGGAAYRYB
VRYRTTCCCRVDN		 Transfac
Matys et al.(2006)
V$IK1_01 		0.804 0.913
IKZF1
M10302_2.00 		Homo sapiens
BNNWTCCCRNNN
NNNYGGGAWNNV		 Transfac
Matys et al.(2006)
V$IK2_01 		0.804 0.913
IKZF1
M10303_2.00 		Homo sapiens
KNYHGGGAAYRYY
RRYRTTCCCDRNM		 Transfac
Matys et al.(2006)
V$IK3_01 		0.804 0.913
IKZF1
M10304_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5_01 		0.804 0.913
IKZF1
M10305_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IK_Q5 		0.804 0.913
IKZF1
M10306_2.00 		Homo sapiens
YYTCCCARA
TYTGGGARR		 Transfac
Matys et al.(2006)
V$LYF1_01 		0.804 0.913
IKZF3
M08320_2.00 		Homo sapiens
TTCCCNNSB
VSNNGGGAA		 ChIP-seq
Schmitges et al.(2016)
Q9UKT9_2-4.RCADE 		0.776 0.837
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_13083 C2H2 ZF 119 141
Pvit_13083 C2H2 ZF 147 169
Pvit_13083 C2H2 ZF 175 197
Pvit_13083 C2H2 ZF 203 226

Links

Other C2H2 ZF family TFs
Other Pogona vitticeps TFs

207 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc10g078670.1 Solanum lycopersicum Solyc10g078670.1 I 0.000
PGSC0003DMG400011430 Solanum tuberosum PGSC0003DMG400011430 I 0.000
ORUFI09G15880 Oryza rufipogon ORUFI09G15880 N 0.000
Pavir.J32240 Panicum virgatum Pavir.J32240 N 0.000
Pavir.Db00756 Panicum virgatum Pavir.Db00756 N 0.000
Pavir.Ba01723 Panicum virgatum Pavir.Ba01723 N 0.000
Traes_5DL_1950C1FC2 Triticum aestivum Traes_5DL_1950C1FC2 N 0.000
Traes_5BL_C08428870 Triticum aestivum Traes_5BL_C08428870 N 0.000
Traes_5AL_39649C38E Triticum aestivum Traes_5AL_39649C38E N 0.000
Si029606m.g Setaria italica Si029606m.g N 0.000
Si006417m.g Setaria italica Si006417m.g N 0.000
Sb10g024190 Sorghum bicolor Sb10g024190 N 0.000
Sb02g028380 Sorghum bicolor Sb02g028380 N 0.000
OS09G0489500 Oryza sativa OS09G0489500 N 0.000
BGIOSGA029546 Oryza indica BGIOSGA029546 N 0.000
ORGLA09G0113500 Oryza glaberrima ORGLA09G0113500 N 0.000
OPUNC09G13200 Oryza punctata OPUNC09G13200 N 0.000
ONIVA08G17430 Oryza nivara ONIVA08G17430 N 0.000
OMERI09G11450 Oryza meridionalis OMERI09G11450 N 0.000
OGLUM09G15360 Oryza glumaepatula OGLUM09G15360 N 0.000
OBART09G14730 Oryza barthii OBART09G14730 N 0.000
MLOC_68986 Hordeum vulgare MLOC_68986 N 0.000
LPERR09G10860 Leersia perrieri LPERR09G10860 N 0.000
GRMZM2G125934 Zea mays GRMZM2G125934 N 0.000
GRMZM2G060290 Zea mays GRMZM2G060290 N 0.000
GRMZM2G006578 Zea mays GRMZM2G006578 N 0.000
BRADI4G33740 Brachypodium distachyon BRADI4G33740 N 0.000