Cucsa.395710 (Cucumis sativus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cucsa.395710 T137952_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.785 0.848
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.784 0.804
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.784 0.804
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.784 0.804
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.770 0.761
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.770 0.761
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.761 0.783
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.759 0.652
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.759 0.630
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.395710.1 C2H2 ZF 85 107
Cucsa.395710.1 C2H2 ZF 136 158

Links

Other C2H2 ZF family TFs
Other Cucumis sativus TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SMUV_0000990001 Syphacia muris SMUV_0000990001 N 0.000
HPLM_0001248301 Haemonchus placei HPLM_0001248301 N 0.000
nAv.1.0.1.g04294 Acanthocheilonema viteae nAv.1.0.1.g04294 N 0.000
NECAME_01451 Necator americanus NECAME_01451 N 0.000
nLs.2.1.2.g09328 Litomosoides sigmodontis nLs.2.1.2.g09328 N 0.000
nOo.2.0.1.g11935 Onchocerca ochengi nOo.2.0.1.g11935 N 0.000
OESDEN_07254 Oesophagostomum dentatum OESDEN_07254 N 0.000
OESDEN_24323 Oesophagostomum dentatum OESDEN_24323 N 0.000
PTRK_0001384100 Parastrongyloides trichosuri PTRK_0001384100 N 0.000
GPUH_0000076201 Gongylonema pulchrum GPUH_0000076201 N 0.000
SSTP_0000594700 Strongyloides stercoralis SSTP_0000594700 N 0.000
SVUK_0000910801 Strongylus vulgaris SVUK_0000910801 N 0.000
SVUK_0002052401 Strongylus vulgaris SVUK_0002052401 N 0.000
TCNE_0000897001 Toxocara canis TCNE_0000897001 N 0.000
TELCIR_08176 Teladorsagia circumcincta TELCIR_08176 N 0.000
TMUE_s0040003800 Trichuris muris TMUE_s0040003800 N 0.000
TTRE_0000375101 Trichuris trichiura TTRE_0000375101 N 0.000
Bm6679 Brugia malayi Bm6679 N 0.000
EEL_0000257001 Elaeophora elaphi EEL_0000257001 N 0.000
DICVIV_02142 Dictyocaulus viviparus DICVIV_02142 N 0.000
D918_02299 Trichuris suis D918_02299 N 0.000
ASU_10686 Ascaris suum ASU_10686 N 0.000
ASIM_0001085501 Anisakis simplex ASIM_0001085501 N 0.000
ANCDUO_02893 Ancylostoma duodenale ANCDUO_02893 N 0.000
ANCCEY_13935 Ancylostoma ceylanicum ANCCEY_13935 N 0.000
ANCCAN_14716 Ancylostoma caninum ANCCAN_14716 N 0.000
ALUE_0000347301 Ascaris lumbricoides ALUE_0000347301 N 0.000
ACOC_0000493901 Angiostrongylus costaricensis ACOC_0000493901 N 0.000
ACAC_0000008501 Angiostrongylus cantonensis ACAC_0000008501 N 0.000
WBGene00238278 Onchocerca volvulus WBGene00238278 N 0.000
grh-1 Caenorhabditis elegans WBGene00001707 N 0.000
LOAG_15534 Loa loa LOAG_15534 N 0.000
CBG08484 Caenorhabditis briggsae CBG08484 N 0.000