CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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fgenesh2_pm.scaffold_50000003
(
Branchiostoma floridae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
fgenesh2_pm.scaffold_50000003
T139833_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pm.scaffold_50000003
C2H2 ZF
10
32
YKCNHCDYSAAQKGTLKRHLAKH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
38
60
YMCGQCGYRTAQKRNLSEHMRTH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
66
89
YKCDQCDYSAARKSTLKQHLAFTH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
95
117
FMCGKCGYRAAEKSRLSQHMRTH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
151
173
YKCDQCDFSASQKSYLNKHLARH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
179
201
YMCGECGYRTTQKAYLSQHMRTH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
207
229
YKCDQCDYSAALKSTLDSHIATH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
235
257
YMCGECGYRTAQKSTLSGHMKTH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
261
283
YKCDQCDFTSANKKTLDHHLAVH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
302
324
YKCDQCDYSAAEKSLLDDHLSTH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
330
352
YTCGECGYSTTEISALSQHMETH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
358
380
YKCDQCDFSAVKKYELDRHLEVH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
386
408
YMCGECGFRTADKSTLSGHMRTH
fgenesh2_pm.scaffold_50000003
C2H2 ZF
412
434
YQCDQCDYSCANKATLERHVAVH
Links
Other
C2H2 ZF
family TFs
Other
Branchiostoma floridae
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
NCU05285
Neurospora crassa
NCU05285
D
PV07_04386
Cladophialophora immunda
PV07_04386
I
Z519_07822
Cladophialophora bantiana
Z519_07822
I
Z518_08321
Rhinocladiella mackenziei
Z518_08321
I
Z517_04076
Fonsecaea pedrosoi
Z517_04076
I
TESG_08227
Trichophyton tonsurans
TESG_08227
I
TESG_05885
Trichophyton tonsurans
TESG_05885
I
PV11_00550
Exophiala sideris
PV11_00550
I
PV10_07034
Exophiala mesophila
PV10_07034
I
PV09_03275
Verruconis gallopava
PV09_03275
I
PV08_00413
Exophiala spinifera
PV08_00413
I
A1O1_03662
Capronia coronata
A1O1_03662
I
PV06_01114
Exophiala oligosperma
PV06_01114
I
PV05_04442
Exophiala xenobiotica
PV05_04442
I
MGU_11750
Metarhizium guizhouense
MGU_11750
I
MGU_10998
Metarhizium guizhouense
MGU_10998
I
MAJ_07934
Metarhizium majus
MAJ_07934
I
HMPREF1541_01683
Cyphellophora europaea
HMPREF1541_01683
I
HMPREF1120_01206
Exophiala dermatitidis
HMPREF1120_01206
I
A1O9_04665
Exophiala aquamarina
A1O9_04665
I
A1O5_07986
Cladophialophora psammophila
A1O5_07986
I
A1O3_07301
Capronia epimyces
A1O3_07301
I