Carubv10014391m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10014391m.g T142717_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.957
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.891
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.761
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.739
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.826
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.826
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.826
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014391m C2H2 ZF 101 123
Carubv10014391m C2H2 ZF 159 181

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PV04_05279 Capronia semiimmersa PV04_05279 I 0.000
G647_04666 Cladophialophora carrionii G647_04666 I 0.000
GGTG_02921 Gaeumannomyces graminis GGTG_02921 I 0.000
GMDG_04017 Pseudogymnoascus destructans GMDG_04017 I 0.000
PV10_00514 Exophiala mesophila PV10_00514 I 0.000
V499_02646 Pseudogymnoascus pannorum V499_02646 I 0.000
Z517_11712 Fonsecaea pedrosoi Z517_11712 I 0.000
Z518_10184 Rhinocladiella mackenziei Z518_10184 I 0.000
MBM_01735 Marssonina brunnea MBM_01735 I 0.000
A1O7_04026 Cladophialophora yegresii A1O7_04026 I 0.000
OIDMADRAFT_140709 Oidiodendron maius OIDMADRAFT_140709 I 0.000
A1O1_00801 Capronia coronata A1O1_00801 I 0.000
PFICI_04450 Pestalotiopsis fici PFICI_04450 I 0.000
A1O3_02841 Capronia epimyces A1O3_02841 I 0.000
MGG_01776 Magnaporthe oryzae MGG_01776 I 0.000
PV04_08823 Capronia semiimmersa PV04_08823 N 0.000
SEPMUDRAFT_163291 Sphaerulina musiva SEPMUDRAFT_163291 N 0.000
PV05_00997 Exophiala xenobiotica PV05_00997 N 0.000
PV05_01304 Exophiala xenobiotica PV05_01304 N 0.000
PV06_09822 Exophiala oligosperma PV06_09822 N 0.000
PV07_00882 Cladophialophora immunda PV07_00882 N 0.000
PV08_08880 Exophiala spinifera PV08_08880 N 0.000
PV09_03074 Verruconis gallopava PV09_03074 N 0.000
PMAA_049200 Talaromyces marneffei PMAA_049200 N 0.000
PTT_14634 Pyrenophora teres PTT_14634 N 0.000
PTRG_11331 Pyrenophora triticirepentis PTRG_11331 N 0.000
PV10_04925 Exophiala mesophila PV10_04925 N 0.000
TSTA_039140 Talaromyces stipitatus TSTA_039140 N 0.000
CIMG_08163 Coccidioides immitis CIMG_08163 N 0.000
fgenesh1_pm.00771_#_78 Aspergillus carbonarius fgenesh1_pm.00771_#_78 N 0.000
estExt_Genewise1Plus.C_230145 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_230145 N 0.000
e_gw1.11.374.1 Mycosphaerella fijiensis e_gw1.11.374.1 N 0.000
Z519_01916 Cladophialophora bantiana Z519_01916 N 0.000
Z518_10852 Rhinocladiella mackenziei Z518_10852 N 0.000
Z517_05164 Fonsecaea pedrosoi Z517_05164 N 0.000
W97_07490 Coniosporium apollinis W97_07490 N 0.000
VHEMI03655 Torrubiella hemipterigena VHEMI03655 N 0.000
PV11_02484 Exophiala sideris PV11_02484 N 0.000
TRV_02239 Trichophyton verrucosum TRV_02239 N 0.000
TRIATDRAFT_181530 Trichoderma atroviride TRIATDRAFT_181530 N 0.000
TESG_03991 Trichophyton tonsurans TESG_03991 N 0.000
TEQG_07260 Trichophyton equinum TEQG_07260 N 0.000
SNOG_12578 Phaeosphaeria nodorum SNOG_12578 N 0.000
SETTUDRAFT_164235 Setosphaeria turcica SETTUDRAFT_164235 N 0.000
PMAA_049200 Penicillium marneffei PMAA_049200 N 0.000
PVAR5_4548 Byssochlamys spectabilis PVAR5_4548 N 0.000
PVAR5_2910 Byssochlamys spectabilis PVAR5_2910 N 0.000
AUEXF2481DRAFT_65216 Aureobasidium subglaciale AUEXF2481DRAFT_65216 N 0.000
COCC4DRAFT_202082 Bipolaris maydis COCC4DRAFT_202082 N 0.000
NFIA_027200 Neosartorya fischeri CADNFIAG00002534 N 0.000
CADAORAG00002457 Aspergillus oryzae CADAORAG00002457 N 0.000
CADANGAG00005435 Aspergillus niger CADANGAG00005435 N 0.000
AFUA_7G05960 Aspergillus fumigatus CADAFUAG00009660 N 0.000
CADAFLAG00000474 Aspergillus flavus CADAFLAG00000474 N 0.000
ACLA_007650 Aspergillus clavatus CADACLAG00000450 N 0.000
BDDG_08162 Blastomyces dermatitidis BDDG_08162 N 0.000
Bcin07g06120 Botrytis cinerea Bcin07g06120 N 0.000
COCCADRAFT_88010 Bipolaris zeicola COCCADRAFT_88010 N 0.000
ARB_01120 Arthroderma benhamiae ARB_01120 N 0.000
AOL_s00215g416 Arthrobotrys oligospora AOL_s00215g416 N 0.000
ACRE_052210 Acremonium chrysogenum ACRE_052210 N 0.000
A1O7_08287 Cladophialophora yegresii A1O7_08287 N 0.000
A1O5_01498 Cladophialophora psammophila A1O5_01498 N 0.000
A1O3_00914 Capronia epimyces A1O3_00914 N 0.000
A1O1_02509 Capronia coronata A1O1_02509 N 0.000
SNOG_12578 Stagonospora nodorum SNOG_12578 N 0.000
H102_03320 Trichophyton rubrum H102_03320 N 0.000
MYCFIDRAFT_190439 Pseudocercospora fijiensis MYCFIDRAFT_190439 N 0.000
MPH_07157 Macrophomina phaseolina MPH_07157 N 0.000
MGYG_07575 Microsporum gypseum MGYG_07575 N 0.000
M438DRAFT_383887 Aureobasidium pullulans M438DRAFT_383887 N 0.000
LEMA_P059350.1 Leptosphaeria maculans LEMA_P059350.1 N 0.000
HMPREF1541_03654 Cyphellophora europaea HMPREF1541_03654 N 0.000
HMPREF1120_02238 Exophiala dermatitidis HMPREF1120_02238 N 0.000
HCBG_04319 Histoplasma capsulatum HCBG_04319 N 0.000
H105_03339 Trichophyton soudanense H105_03339 N 0.000
PDE_02184 Penicillium oxalicum PDE_02184 N 0.000
H101_04104 Trichophyton interdigitale H101_04104 N 0.000
H072_9547 Dactylellina haptotyla H072_9547 N 0.000
GSTUM_00002483001 Tuber melanosporum GSTUM_00002483001 N 0.000
G647_07244 Cladophialophora carrionii G647_07244 N 0.000
DOTSEDRAFT_75761 Dothistroma septosporum DOTSEDRAFT_75761 N 0.000
CPC735_021860 Coccidioides posadasii CPC735_021860 N 0.000
COCVIDRAFT_111354 Bipolaris victoriae COCVIDRAFT_111354 N 0.000
COCSADRAFT_314350 Bipolaris sorokiniana COCSADRAFT_314350 N 0.000