Carubv10015875m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10015875m.g T142719_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G15740
M06810_2.00 		Arabidopsis thaliana
WCGHHDYCGWY
RWCGRHDDCGW		 Dap-seq
OMalley et al.(2016)
AT2G15740_col_a 		0.827 0.957
AT5G22990
M06821_2.00 		Arabidopsis thaliana
WCGWHDTCGWYNHNN
NNDNRWCGAHDWCGW		 Dap-seq
OMalley et al.(2016)
AT5G22990_col_a 		0.825 0.913
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10015875m C2H2 ZF 247 269

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MESP1 Homo sapiens ENSG00000166823 D
MESP1 Pteropus vampyrus ENSPVAG00000010571 I
MESP1 Monodelphis domestica ENSMODG00000019538 I
Mesp2 Mus musculus ENSMUSG00000030543 I
ENSONIG00000002991 Oreochromis niloticus ENSONIG00000002991 I
ENSORLG00000014659 Oryzias latipes ENSORLG00000014659 I
MESP1 Procavia capensis ENSPCAG00000008272 I
ENSPPYG00000006771 Pongo abelii ENSPPYG00000006771 I
ENSPPYG00000006864 Pongo abelii ENSPPYG00000006864 I
MESP2 Bos taurus ENSBTAG00000027058 I
Mesp2 Rattus norvegicus ENSRNOG00000014925 I
MESP1 Sus scrofa ENSSSCG00000001847 I
MESP2 Sus scrofa ENSSSCG00000001848 I
ENSTRUG00000015316 Takifugu rubripes ENSTRUG00000015316 I
MESP2 Tursiops truncatus ENSTTRG00000015545 I
Cmyd_10013605 Chelonia mydas Cmyd_10013605 I
ENSP00000300057-D1 Bos grunniens ENSP00000300057-D1 I
MESP1 Felis catus ENSFCAG00000008973 I
ENSCSAG00000017134 Chlorocebus sabaeus ENSCSAG00000017134 I
MESP2 Cavia porcellus ENSCPOG00000019717 I
MESP1 Canis familiaris ENSCAFG00000030023 I
ENSAMEG00000013214 Ailuropoda melanoleuca ENSAMEG00000013214 I
mespab Danio rerio ENSDARG00000068761 I
MESP2 Dasypus novemcinctus ENSDNOG00000037045 I
MESP1 Gorilla gorilla ENSGGOG00000014946 I
MESP1 Macaca mulatta ENSMMUG00000010586 I
MESP1 Loxodonta africana ENSLAFG00000022195 I
ENSLOCG00000014493 Lepisosteus oculatus ENSLOCG00000014493 I
ENSLOCG00000014496 Lepisosteus oculatus ENSLOCG00000014496 I
ENSLOCG00000017951 Lepisosteus oculatus ENSLOCG00000017951 I
mespb.L Xenopus laevis XB-GENE-970944 N
mespb Xenopus tropicalis XB-GENE-970939 N
mespb.S Xenopus laevis XB-GENE-17337060 N
ENSXMAG00000016981 Xiphophorus maculatus ENSXMAG00000016981 N
ENSTRUG00000015314 Takifugu rubripes ENSTRUG00000015314 N
ENSTNIG00000011917 Tetraodon nigroviridis ENSTNIG00000011917 N
ENSTNIG00000000556 Tetraodon nigroviridis ENSTNIG00000000556 N
mespba Danio rerio ENSDARG00000030347 N
mespbb Danio rerio ENSDARG00000097947 N
ENSPFOG00000015962 Poecilia formosa ENSPFOG00000015962 N
ENSGMOG00000007778 Gadus morhua ENSGMOG00000007778 N