Carubv10024179m.g (Capsella rubella)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Carubv10024179m.g T142742_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.787 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.786 0.804
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.786 0.804
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.776 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.771 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.771 0.761
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.767 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.756 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.756 0.717
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.756 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10024179m C2H2 ZF 48 70
Carubv10024179m C2H2 ZF 92 114

Links

Other C2H2 ZF family TFs
Other Capsella rubella TFs

343 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANIA_01298 Aspergillus nidulans CADANIAG00001319 D 0.000
PV05_08012 Exophiala xenobiotica PV05_08012 I 0.000
SNOG_15057 Phaeosphaeria nodorum SNOG_15057 I 0.000
SEPMUDRAFT_146214 Sphaerulina musiva SEPMUDRAFT_146214 I 0.000
PVAR5_5311 Byssochlamys spectabilis PVAR5_5311 I 0.000
PV11_07531 Exophiala sideris PV11_07531 I 0.000
PV08_08114 Exophiala spinifera PV08_08114 I 0.000
PV07_03563 Cladophialophora immunda PV07_03563 I 0.000
PV06_10058 Exophiala oligosperma PV06_10058 I 0.000
THITE_2113068 Thielavia terrestris THITE_2113068 I 0.000
PV04_06676 Capronia semiimmersa PV04_06676 I 0.000
PMAA_025110 Talaromyces marneffei PMAA_025110 I 0.000
PITC_023420 Penicillium italicum PITC_023420 I 0.000
PEX1_052970 Penicillium expansum PEX1_052970 I 0.000
PDIP_40460 Penicillium digitatum PDIP_40460 I 0.000
PCH_Pc16g06560 Penicillium rubens PCH_Pc16g06560 I 0.000
PABG_03267 Paracoccidioides brasiliensis PABG_03267 I 0.000
PAAG_02798 Paracoccidioides sp lutzii PAAG_02798 I 0.000
Mycgr3G84231 Zymoseptoria tritici Mycgr3G84231 I 0.000
TRV_02680 Trichophyton verrucosum TRV_02680 I 0.000
TSTA_073940 Talaromyces stipitatus TSTA_073940 I 0.000
U727_0043047031 Penicillium solitum U727_0043047031 I 0.000
UCREL1_1818 Eutypa lata UCREL1_1818 I 0.000
UCRNP2_6160 Neofusicoccum parvum UCRNP2_6160 I 0.000
UREG_03477 Uncinocarpus reesii UREG_03477 I 0.000
V499_08351 Pseudogymnoascus pannorum V499_08351 I 0.000
Z517_01133 Fonsecaea pedrosoi Z517_01133 I 0.000
Z518_05851 Rhinocladiella mackenziei Z518_05851 I 0.000
Z519_03796 Cladophialophora bantiana Z519_03796 I 0.000
fgenesh1_pm.C_chr_1000941 Mycosphaerella graminicola fgenesh1_pm.C_chr_1000941 I 0.000
fgenesh1_pm.C_scaffold_1000119 Mycosphaerella fijiensis fgenesh1_pm.C_scaffold_1000119 I 0.000
e_gw1.00083.362.1 Aspergillus carbonarius e_gw1.00083.362.1 I 0.000
Pc16g06560 Penicillium chrysogenum Pc16g06560 I 0.000
PMAA_025110 Penicillium marneffei PMAA_025110 I 0.000
ACRE_033680 Acremonium chrysogenum ACRE_033680 I 0.000
ATEG_04204 Aspergillus terreus CADATEAG00009987 I 0.000
CADAORAG00006402 Aspergillus oryzae CADAORAG00006402 I 0.000
CADANGAG00006457 Aspergillus niger CADANGAG00006457 I 0.000
AFUA_1G09670 Aspergillus fumigatus CADAFUAG00007221 I 0.000
CADAFLAG00004009 Aspergillus flavus CADAFLAG00004009 I 0.000
ACLA_025830 Aspergillus clavatus CADACLAG00002824 I 0.000
BDDG_06829 Blastomyces dermatitidis BDDG_06829 I 0.000
ARB_00440 Arthroderma benhamiae ARB_00440 I 0.000
NFIA_015940 Neosartorya fischeri CADNFIAG00000638 I 0.000
A1O9_10773 Exophiala aquamarina A1O9_10773 I 0.000
A1O7_06270 Cladophialophora yegresii A1O7_06270 I 0.000
A1O5_08857 Cladophialophora psammophila A1O5_08857 I 0.000
A1O3_05723 Capronia epimyces A1O3_05723 I 0.000
A1O1_06603 Capronia coronata A1O1_06603 I 0.000
SNOG_15057 Stagonospora nodorum SNOG_15057 I 0.000
MCYG_06262 Microsporum canis MCYG_06262 I 0.000
OCS_06442 Ophiocordyceps sinensis OCS_06442 I 0.000
CPC735_013440 Coccidioides posadasii CPC735_013440 I 0.000
DOTSEDRAFT_69021 Dothistroma septosporum DOTSEDRAFT_69021 I 0.000
EPUS_06221 Endocarpon pusillum EPUS_06221 I 0.000
EURHEDRAFT_415231 Aspergillus ruber EURHEDRAFT_415231 I 0.000
G647_06262 Cladophialophora carrionii G647_06262 I 0.000
GMDG_01119 Pseudogymnoascus destructans GMDG_01119 I 0.000
H102_01702 Trichophyton rubrum H102_01702 I 0.000
H105_01718 Trichophyton soudanense H105_01718 I 0.000
HMPREF1120_04164 Exophiala dermatitidis HMPREF1120_04164 I 0.000
LEMA_P050050.1 Leptosphaeria maculans LEMA_P050050.1 I 0.000
MAM_03651 Metarhizium album MAM_03651 I 0.000
MGYG_06696 Microsporum gypseum MGYG_06696 I 0.000
MPH_03547 Macrophomina phaseolina MPH_03547 I 0.000
MYCFIDRAFT_148203 Pseudocercospora fijiensis MYCFIDRAFT_148203 I 0.000
CIMG_10254 Coccidioides immitis CIMG_10254 I 0.000