Ciclev10032899m.g (Citrus clementina)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ciclev10032899m.g T142799_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.794 0.761
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.789 0.804
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.789 0.804
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.780 0.761
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.780 0.761
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.768 0.674
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.765 0.739
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.757 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10032899m C2H2 ZF 42 64
Ciclev10032899m C2H2 ZF 89 111

Links

Other C2H2 ZF family TFs
Other Citrus clementina TFs

372 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSSTOG00000019842 Ictidomys tridecemlineatus ENSSTOG00000019842 I 0.000
ENSPMAG00000005876 Petromyzon marinus ENSPMAG00000005876 I 0.000
grhl1 Danio rerio ENSDARG00000061391 I 0.000
GRHL3 Taeniopygia guttata ENSTGUG00000001153 N 0.000
GRHL3 Tursiops truncatus ENSTTRG00000016160 N 0.000
ENSSTOG00000023529 Ictidomys tridecemlineatus ENSSTOG00000023529 N 0.000
GRHL3 Sus scrofa ENSSSCG00000003539 N 0.000
ENSSHAG00000008311 Sarcophilus harrisii ENSSHAG00000008311 N 0.000
Grhl3 Rattus norvegicus ENSRNOG00000029427 N 0.000
GRHL3 Pteropus vampyrus ENSPVAG00000005827 N 0.000
GRHL3 Pan troglodytes ENSPTRG00000000344 N 0.000
ENSPSIG00000016215 Pelodiscus sinensis ENSPSIG00000016215 N 0.000
ENSPPYG00000001721 Pongo abelii ENSPPYG00000001721 N 0.000
GRHL3 Procavia capensis ENSPCAG00000011355 N 0.000
ENSPANG00000024748 Papio anubis ENSPANG00000024748 N 0.000
GRHL3 Ochotona princeps ENSOPRG00000003928 N 0.000
ENSONIG00000003513 Oreochromis niloticus ENSONIG00000003513 N 0.000
GRHL3 Oryctolagus cuniculus ENSOCUG00000013357 N 0.000
Aan_R005902 Calypte anna Aan_R005902 N 0.000
Afo_R008962 Aptenodytes forsteri Afo_R008962 N 0.000
Alligator_sinensis_CCG010998.1 Alligator sinensis Alligator_sinensis_CCG010998.1 N 0.000
Brh_R012570 Buceros rhinoceros Brh_R012570 N 0.000
Cmyd_10004499 Chelonia mydas Cmyd_10004499 N 0.000
ENSBTAP00000026370-D1 Bos grunniens ENSBTAP00000026370-D1 N 0.000
ENSP00000288955 Macaca fascicularis ENSP00000288955 N 0.000
Gfo_R011603 Geospiza fortis Gfo_R011603 N 0.000
Myotis_brandtii_Grhl3_10029711 Myotis brandtii Myotis_brandtii_Grhl3_10029711 N 0.000
Pvit_10773 Pogona vitticeps Pvit_10773 N 0.000
Tal_R005479 Tyto alba Tal_R005479 N 0.000
grhl3.S Xenopus laevis XB-GENE-17342846 N 0.000
grhl3 Xenopus tropicalis XB-GENE-919797 N 0.000
grhl3.L Xenopus laevis XB-GENE-919808 N 0.000
GRHL3 Gorilla gorilla ENSGGOG00000001792 N 0.000
ENSAMEG00000009982 Ailuropoda melanoleuca ENSAMEG00000009982 N 0.000
ENSAPLG00000003161 Anas platyrhynchos ENSAPLG00000003161 N 0.000
GRHL3 Canis familiaris ENSCAFG00000012994 N 0.000
GRHL3 Choloepus hoffmanni ENSCHOG00000000305 N 0.000
GRHL3 Callithrix jacchus ENSCJAG00000020858 N 0.000
GRHL3 Cavia porcellus ENSCPOG00000008841 N 0.000
ENSCSAG00000000939 Chlorocebus sabaeus ENSCSAG00000000939 N 0.000
GRHL3 Dasypus novemcinctus ENSDNOG00000013939 N 0.000
Grhl3 Dipodomys ordii ENSDORG00000001381 N 0.000
GRHL3 Equus caballus ENSECAG00000009866 N 0.000
GRHL3 Echinops telfairi ENSETEG00000001594 N 0.000
ENSFALG00000000490 Ficedula albicollis ENSFALG00000000490 N 0.000
GRHL3 Felis catus ENSFCAG00000019048 N 0.000
GRHL3 Homo sapiens ENSG00000158055 N 0.000
GRHL3 Gallus gallus ENSGALG00000004249 N 0.000
GRHL3 Otolemur garnettii ENSOGAG00000011027 N 0.000
GRHL3 Loxodonta africana ENSLAFG00000001618 N 0.000
ENSMEUG00000004978 Macropus eugenii ENSMEUG00000004978 N 0.000
GRHL3 Meleagris gallopavo ENSMGAG00000005903 N 0.000
GRHL3 Microcebus murinus ENSMICG00000000542 N 0.000
ENSMLUG00000012056 Myotis lucifugus ENSMLUG00000012056 N 0.000
ENSMLUG00000027396 Myotis lucifugus ENSMLUG00000027396 N 0.000
GRHL3 Macaca mulatta ENSMMUG00000004463 N 0.000
GRHL3 Monodelphis domestica ENSMODG00000013064 N 0.000
ENSMPUG00000015840 Mustela putorius furo ENSMPUG00000015840 N 0.000
Grhl3 Mus musculus ENSMUSG00000037188 N 0.000
ENSNLEG00000008898 Nomascus leucogenys ENSNLEG00000008898 N 0.000
GRHL3 Ornithorhynchus anatinus ENSOANG00000002207 N 0.000
ENSOARG00000006636 Ovis aries ENSOARG00000006636 N 0.000
GRHL3 Anolis carolinensis ENSACAG00000017262 N 0.000