gene02558-v1.0-hybrid (Fragaria vesca)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 gene02558-v1.0-hybrid T142941_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.822 0.913
ZAT6
M00861_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT6 		0.803 0.935
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.799 0.717
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.799 0.696
ZAT10
M01852_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7255 		0.796 0.870
ZAT10
M06799_2.00 		Arabidopsis thaliana
WSHHCACT
AGTGDDSW		 Dap-seq
OMalley et al.(2016)
STZ_colamp_a 		0.796 0.870
ZAT10
M06800_2.00 		Arabidopsis thaliana
YWSHNHCASTN
NASTGDNDSWR		 Dap-seq
OMalley et al.(2016)
STZ_col 		0.796 0.870
AZF1
M01860_2.00 		Arabidopsis thaliana
NWSYDNN
NNHRSWN		 PBM
Weirauch et al.(2014)
pTH7163 		0.787 0.804
AZF1
M06826_2.00 		Arabidopsis thaliana
WCACTVWCWNH
DNWGWBAGTGW		 Dap-seq
OMalley et al.(2016)
AZF1_colamp_a 		0.787 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.776 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna02558.1-v1.0-hybrid C2H2 ZF 101 123
mrna02558.1-v1.0-hybrid C2H2 ZF 158 180

Links

Other C2H2 ZF family TFs
Other Fragaria vesca TFs

230 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_00801 Capronia coronata A1O1_00801 I
PFICI_04450 Pestalotiopsis fici PFICI_04450 I
PV04_05279 Capronia semiimmersa PV04_05279 I
PV10_00514 Exophiala mesophila PV10_00514 I
G647_04666 Cladophialophora carrionii G647_04666 I
Z517_11712 Fonsecaea pedrosoi Z517_11712 I
Z518_10184 Rhinocladiella mackenziei Z518_10184 I
A1O3_02841 Capronia epimyces A1O3_02841 I
A1O7_04026 Cladophialophora yegresii A1O7_04026 I
PV10_04925 Exophiala mesophila PV10_04925 N
PMAA_049200 Penicillium marneffei PMAA_049200 N
PITC_029080 Penicillium italicum PITC_029080 N
PMAA_049200 Talaromyces marneffei PMAA_049200 N
CIMG_08163 Coccidioides immitis CIMG_08163 N
PV04_08823 Capronia semiimmersa PV04_08823 N
PV05_00997 Exophiala xenobiotica PV05_00997 N
PV05_01304 Exophiala xenobiotica PV05_01304 N
PV06_09822 Exophiala oligosperma PV06_09822 N
PV07_00882 Cladophialophora immunda PV07_00882 N
PV08_08880 Exophiala spinifera PV08_08880 N
Pc20g01360 Penicillium chrysogenum Pc20g01360 N
TEQG_07260 Trichophyton equinum TEQG_07260 N
TESG_03991 Trichophyton tonsurans TESG_03991 N
TRV_02239 Trichophyton verrucosum TRV_02239 N
TSTA_039140 Talaromyces stipitatus TSTA_039140 N
U727_00431380241 Penicillium solitum U727_00431380241 N
Z517_05164 Fonsecaea pedrosoi Z517_05164 N
fgenesh1_pm.00771_#_78 Aspergillus carbonarius fgenesh1_pm.00771_#_78 N
Z519_12024 Cladophialophora bantiana Z519_12024 N
Z518_10852 Rhinocladiella mackenziei Z518_10852 N
Z519_01916 Cladophialophora bantiana Z519_01916 N
NFIA_027200 Neosartorya fischeri CADNFIAG00002534 N
A1O1_02509 Capronia coronata A1O1_02509 N
A1O3_00914 Capronia epimyces A1O3_00914 N
A1O5_01498 Cladophialophora psammophila A1O5_01498 N
A1O5_03005 Cladophialophora psammophila A1O5_03005 N
A1O7_08287 Cladophialophora yegresii A1O7_08287 N
ARB_01120 Arthroderma benhamiae ARB_01120 N
AUEXF2481DRAFT_65216 Aureobasidium subglaciale AUEXF2481DRAFT_65216 N
ACLA_007650 Aspergillus clavatus CADACLAG00000450 N
CADAFLAG00000474 Aspergillus flavus CADAFLAG00000474 N
AFUA_7G05960 Aspergillus fumigatus CADAFUAG00009660 N
CADANGAG00005435 Aspergillus niger CADANGAG00005435 N
CADAORAG00002457 Aspergillus oryzae CADAORAG00002457 N
PEX1_025390 Penicillium expansum PEX1_025390 N
CPC735_021860 Coccidioides posadasii CPC735_021860 N
G647_07244 Cladophialophora carrionii G647_07244 N
H101_04104 Trichophyton interdigitale H101_04104 N
H102_03320 Trichophyton rubrum H102_03320 N
H105_03339 Trichophyton soudanense H105_03339 N
HMPREF1120_02238 Exophiala dermatitidis HMPREF1120_02238 N
HMPREF1541_03654 Cyphellophora europaea HMPREF1541_03654 N
M438DRAFT_383887 Aureobasidium pullulans M438DRAFT_383887 N
MGYG_07575 Microsporum gypseum MGYG_07575 N
PCH_Pc20g01360 Penicillium rubens PCH_Pc20g01360 N
PDE_02184 Penicillium oxalicum PDE_02184 N
PDIP_22920 Penicillium digitatum PDIP_22920 N