MDP0000606526 (Malus domestica)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 MDP0000606526 T143234_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.795 0.826
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN

NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.795 0.826
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN

NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.795 0.761
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN

NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.776 0.804
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH

DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.768 0.826
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN

NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.762 0.761
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN

NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.762 0.761
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000606526 C2H2 ZF 118 140
MDP0000606526 C2H2 ZF 169 191

Links

Other C2H2 ZF family TFs
Other Malus domestica TFs

370 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZNF518B Vicugna pacos ENSVPAG00000001202 N
ENSNLEG00000016204 Nomascus leucogenys ENSNLEG00000016204 N
ZNF518B Ornithorhynchus anatinus ENSOANG00000013888 N
ZNF518B Otolemur garnettii ENSOGAG00000029956 N
ENSPANG00000002997 Papio anubis ENSPANG00000002997 N
ZNF518B Procavia capensis ENSPCAG00000013765 N
ENSPSIG00000013251 Pelodiscus sinensis ENSPSIG00000013251 N
ZNF518B Pan troglodytes ENSPTRG00000015917 N
ZNF518B Pteropus vampyrus ENSPVAG00000003696 N
Zfp518b Rattus norvegicus ENSRNOG00000028534 N
ZNF518B Sus scrofa ENSSSCG00000029711 N
Zfp518b Mus musculus ENSMUSG00000046572 N
Aan_R008583 Calypte anna Aan_R008583 N
Afo_R009830 Aptenodytes forsteri Afo_R009830 N
Brh_R003491 Buceros rhinoceros Brh_R003491 N
Cmyd_10009688 Chelonia mydas Cmyd_10009688 N
ENSP00000317614-D1 Bos grunniens ENSP00000317614-D1 N
ENSP00000317614 Macaca fascicularis ENSP00000317614 N
Gfo_R010300 Geospiza fortis Gfo_R010300 N
Ogr09561 Ophisaurus gracilis Ogr09561 N
Tal_R010480 Tyto alba Tal_R010480 N
ZNF518B Felis catus ENSFCAG00000030856 N
ENSAPLG00000016167 Anas platyrhynchos ENSAPLG00000016167 N
ENSBTAG00000039871 Bos taurus ENSBTAG00000039871 N
ZNF518B Canis familiaris ENSCAFG00000015463 N
ZNF518B Choloepus hoffmanni ENSCHOG00000010179 N
ZNF518B Callithrix jacchus ENSCJAG00000022790 N
ZNF518B Cavia porcellus ENSCPOG00000026360 N
ENSCSAG00000019700 Chlorocebus sabaeus ENSCSAG00000019700 N
ZNF518B Dasypus novemcinctus ENSDNOG00000038140 N
ZNF518B Erinaceus europaeus ENSEEUG00000015023 N
ENSFALG00000014741 Ficedula albicollis ENSFALG00000014741 N
ENSAMEG00000019338 Ailuropoda melanoleuca ENSAMEG00000019338 N
ZNF518B Homo sapiens ENSG00000178163 N
ZNF518B Gallus gallus ENSGALG00000014954 N
ZNF518B Gorilla gorilla ENSGGOG00000003355 N
ZNF518B Loxodonta africana ENSLAFG00000013802 N
ENSMEUG00000013185 Macropus eugenii ENSMEUG00000013185 N
ZNF518B Meleagris gallopavo ENSMGAG00000012687 N
ENSMICG00000005284 Microcebus murinus ENSMICG00000005284 N
ZNF518B Macaca mulatta ENSMMUG00000017761 N
ENSMPUG00000019802 Mustela putorius furo ENSMPUG00000019802 N