CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000606526
(
Malus domestica
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
MDP0000606526
T143234_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT5G04390
M01857_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Weirauch et al.(2014)
pTH7158
0.795
0.826
AT5G04390
M06819_2.00
Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD
Dap-seq
OMalley et al.(2016)
At5g04390_col200_a
0.795
0.826
AT5G03510
M00860_2.00
Arabidopsis thaliana
NNHRSWN
NWSYDNN
PBM
Franco-Zorrilla et al.(2014)
ZAT14
0.795
0.761
ZAT7
M01855_2.00
Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN
PBM
Weirauch et al.(2014)
pTH7540
0.776
0.804
AT3G46070
M06813_2.00
Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD
Dap-seq
OMalley et al.(2016)
AT3G46070_col_a
0.768
0.826
AT3G53600
M01856_2.00
Arabidopsis thaliana
NNHASWN
NWSTDNN
PBM
Weirauch et al.(2014)
pTH7188
0.762
0.761
AT3G53600
M00858_2.00
Arabidopsis thaliana
NNNNRSWN
NWSYNNNN
PBM
Franco-Zorrilla et al.(2014)
ZAT18
0.762
0.761
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000606526
C2H2 ZF
118
140
FVCKTCNREFPSFQALGGHRASH
MDP0000606526
C2H2 ZF
169
191
HECPICGLEFAIGQALGGHMRRH
Links
Other
C2H2 ZF
family TFs
Other
Malus domestica
TFs
370 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ZNF518B
Vicugna pacos
ENSVPAG00000001202
N
ENSNLEG00000016204
Nomascus leucogenys
ENSNLEG00000016204
N
ZNF518B
Ornithorhynchus anatinus
ENSOANG00000013888
N
ZNF518B
Otolemur garnettii
ENSOGAG00000029956
N
ENSPANG00000002997
Papio anubis
ENSPANG00000002997
N
ZNF518B
Procavia capensis
ENSPCAG00000013765
N
ENSPSIG00000013251
Pelodiscus sinensis
ENSPSIG00000013251
N
ZNF518B
Pan troglodytes
ENSPTRG00000015917
N
ZNF518B
Pteropus vampyrus
ENSPVAG00000003696
N
Zfp518b
Rattus norvegicus
ENSRNOG00000028534
N
ZNF518B
Sus scrofa
ENSSSCG00000029711
N
Zfp518b
Mus musculus
ENSMUSG00000046572
N
Aan_R008583
Calypte anna
Aan_R008583
N
Afo_R009830
Aptenodytes forsteri
Afo_R009830
N
Brh_R003491
Buceros rhinoceros
Brh_R003491
N
Cmyd_10009688
Chelonia mydas
Cmyd_10009688
N
ENSP00000317614-D1
Bos grunniens
ENSP00000317614-D1
N
ENSP00000317614
Macaca fascicularis
ENSP00000317614
N
Gfo_R010300
Geospiza fortis
Gfo_R010300
N
Ogr09561
Ophisaurus gracilis
Ogr09561
N
Tal_R010480
Tyto alba
Tal_R010480
N
ZNF518B
Felis catus
ENSFCAG00000030856
N
ENSAPLG00000016167
Anas platyrhynchos
ENSAPLG00000016167
N
ENSBTAG00000039871
Bos taurus
ENSBTAG00000039871
N
ZNF518B
Canis familiaris
ENSCAFG00000015463
N
ZNF518B
Choloepus hoffmanni
ENSCHOG00000010179
N
ZNF518B
Callithrix jacchus
ENSCJAG00000022790
N
ZNF518B
Cavia porcellus
ENSCPOG00000026360
N
ENSCSAG00000019700
Chlorocebus sabaeus
ENSCSAG00000019700
N
ZNF518B
Dasypus novemcinctus
ENSDNOG00000038140
N
ZNF518B
Erinaceus europaeus
ENSEEUG00000015023
N
ENSFALG00000014741
Ficedula albicollis
ENSFALG00000014741
N
ENSAMEG00000019338
Ailuropoda melanoleuca
ENSAMEG00000019338
N
ZNF518B
Homo sapiens
ENSG00000178163
N
ZNF518B
Gallus gallus
ENSGALG00000014954
N
ZNF518B
Gorilla gorilla
ENSGGOG00000003355
N
ZNF518B
Loxodonta africana
ENSLAFG00000013802
N
ENSMEUG00000013185
Macropus eugenii
ENSMEUG00000013185
N
ZNF518B
Meleagris gallopavo
ENSMGAG00000012687
N
ENSMICG00000005284
Microcebus murinus
ENSMICG00000005284
N
ZNF518B
Macaca mulatta
ENSMMUG00000017761
N
ENSMPUG00000019802
Mustela putorius furo
ENSMPUG00000019802
N