orange1.1g031966m.g (Citrus sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 orange1.1g031966m.g T143274_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.800 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.795 0.826
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.795 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.787 0.804
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.787 0.804
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.774 0.696
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.772 0.783
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.764 0.804
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g031966m C2H2 ZF 22 44
orange1.1g031966m C2H2 ZF 68 90

Links

Other C2H2 ZF family TFs
Other Citrus sinensis TFs

392 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TEQG_05685 Trichophyton equinum TEQG_05685 N
OIDMADRAFT_72735 Oidiodendron maius OIDMADRAFT_72735 N
PDIP_15270 Penicillium digitatum PDIP_15270 N
PEX1_055770 Penicillium expansum PEX1_055770 N
PV11_07762 Exophiala sideris PV11_07762 N
S40285_04014 Stachybotrys chlorohalonata S40285_04014 N
S40288_02610 Stachybotrys chartarum S40288_02610 N
SETTUDRAFT_155346 Setosphaeria turcica SETTUDRAFT_155346 N
SNOG_12765 Phaeosphaeria nodorum SNOG_12765 N
NEUTE1DRAFT_145502 Neurospora tetrasperma NEUTE1DRAFT_145502 N
TESG_07096 Trichophyton tonsurans TESG_07096 N
U727_00430311441 Penicillium solitum U727_00430311441 N
UV8b_3206 Ustilaginoidea virens UV8b_3206 N
V499_01312 Pseudogymnoascus pannorum V499_01312 N
VDAG_09033 Verticillium dahliae VDAG_09033 N
VDBG_04344 Verticillium alfalfae VDBG_04344 N
W97_05320 Coniosporium apollinis W97_05320 N
MCYG_02571 Microsporum canis MCYG_02571 N
MCYG_02571 Arthroderma otae MCYG_02571 N
LEMA_P057910.1 Leptosphaeria maculans LEMA_P057910.1 N
HCBG_07168 Histoplasma capsulatum HCBG_07168 N
H101_00195 Trichophyton interdigitale H101_00195 N
GSTUM_00009064001 Tuber melanosporum GSTUM_00009064001 N
FFUJ_12262 Fusarium fujikuroi FFUJ_12262 N
F503_04971 Ophiostoma piceae uamh F503_04971 N
CTHT_0034060 Chaetomium thermophilum CTHT_0034060 N
CSUB01_01897 Colletotrichum sublineola CSUB01_01897 N
CMQ_1168 Grosmannia clavigera CMQ_1168 N
CH063_08271 Colletotrichum higginsianum CH063_08271 N
CADANGAG00011028 Aspergillus niger CADANGAG00011028 N
ACRE_078720 Acremonium chrysogenum ACRE_078720 N
VDBG_04344 Verticillium albo atrum VDBG_04344 N
SNOG_01738 Stagonospora nodorum SNOG_01738 N