Thhalv10014884m.g (Eutrema salsugineum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Thhalv10014884m.g T143560_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT7
M01855_2.00 		Arabidopsis thaliana
NVDBRCACTNNNN
NNNNAGTGYVHBN		 PBM
Weirauch et al.(2014)
pTH7540 		0.803 0.935
AT5G03510
M00860_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT14 		0.772 0.783
AT5G04390
M01857_2.00 		Arabidopsis thaliana
NNHRSWN
NWSYDNN		 PBM
Weirauch et al.(2014)
pTH7158 		0.771 0.761
AT5G04390
M06819_2.00 		Arabidopsis thaliana
HHHHWHCACTN
NAGTGDWDDDD		 Dap-seq
OMalley et al.(2016)
At5g04390_col200_a 		0.771 0.761
AT3G46070
M06813_2.00 		Arabidopsis thaliana
HYHHYHTCACTYHHH
DDDRAGTGADRDDRD		 Dap-seq
OMalley et al.(2016)
AT3G46070_col_a 		0.768 0.826
AT3G53600
M01856_2.00 		Arabidopsis thaliana
NNHASWN
NWSTDNN		 PBM
Weirauch et al.(2014)
pTH7188 		0.761 0.717
AT3G53600
M00858_2.00 		Arabidopsis thaliana
NNNNRSWN
NWSYNNNN		 PBM
Franco-Zorrilla et al.(2014)
ZAT18 		0.761 0.717
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10014884m C2H2 ZF 39 61
Thhalv10014884m C2H2 ZF 82 104

Links

Other C2H2 ZF family TFs
Other Eutrema salsugineum TFs

356 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
M407DRAFT_30153 Tulasnella calospora M407DRAFT_30153 N 0.000
estExt_Genewise1.C_70735 Heterobasidion annosum estExt_Genewise1.C_70735 N 0.000
SERLA73DRAFT_55337 Serpula lacrymans SERLA73DRAFT_55337 N 0.000
SCHCODRAFT_81726 Schizophyllum commune SCHCODRAFT_81726 N 0.000
PISMIDRAFT_684265 Pisolithus microcarpus PISMIDRAFT_684265 N 0.000
PILCRDRAFT_812975 Piloderma croceum PILCRDRAFT_812975 N 0.000
PIIN_00682 Piriformospora indica PIIN_00682 N 0.000
PHLGIDRAFT_126149 Phlebiopsis gigantea PHLGIDRAFT_126149 N 0.000
PHACADRAFT_262394 Phanerochaete carnosa PHACADRAFT_262394 N 0.000
PAXRUDRAFT_143066 Paxillus rubicundulus PAXRUDRAFT_143066 N 0.000
Moror_12409 Moniliophthora roreri Moror_12409 N 0.000
M422DRAFT_55406 Sphaerobolus stellatus M422DRAFT_55406 N 0.000
M413DRAFT_444187 Hebeloma cylindrosporum M413DRAFT_444187 N 0.000
M408DRAFT_198102 Serendipita vermifera M408DRAFT_198102 N 0.000
AGABI2DRAFT_224213 Agaricus bisporus AGABI2DRAFT_224213 N 0.000
M404DRAFT_248099 Pisolithus tinctorius M404DRAFT_248099 N 0.000
K443DRAFT_672892 Laccaria amethystina K443DRAFT_672892 N 0.000
JAAARDRAFT_30454 Jaapia argillacea JAAARDRAFT_30454 N 0.000
HYDPIDRAFT_182671 Hydnomerulius pinastri HYDPIDRAFT_182671 N 0.000
GLOTRDRAFT_66280 Gloeophyllum trabeum GLOTRDRAFT_66280 N 0.000
GALMADRAFT_238181 Galerina marginata GALMADRAFT_238181 N 0.000
FOMPIDRAFT_1031471 Fomitopsis pinicola FOMPIDRAFT_1031471 N 0.000
FIBRA_04563 Fibroporia radiculosa FIBRA_04563 N 0.000
DICSQDRAFT_163586 Dichomitus squalens DICSQDRAFT_163586 N 0.000
CY34DRAFT_21340 Suillus luteus CY34DRAFT_21340 N 0.000
CERSUDRAFT_89102 Ceriporiopsis subvermispora CERSUDRAFT_89102 N 0.000
BOTBODRAFT_50846 Botryobasidium botryosum BOTBODRAFT_50846 N 0.000