CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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LCUP006861
(
Lucilia cuprina
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
LCUP006861
T144253_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
sna
M03670_2.00
Drosophila melanogaster
TRCACCTGTYVB
VBRACAGGTGYA
SELEX
Nitta et al.(2015)
sna_1
0.797
0.921
sna
M05862_2.00
Drosophila melanogaster
NNVCACCTGTYNN
NNRACAGGTGBNN
SMiLE-seq
Isakova et al.(2017)
Sna
0.797
0.921
sna
M06069_2.00
Drosophila melanogaster
SMACYTGYBN
NVRCARGTKS
B1H
Zhu et al.(2011)
sna_FlyReg_FBgn0003448
0.797
0.921
sna
M06070_2.00
Drosophila melanogaster
SCACCTGWYV
BRWCAGGTGS
B1H
Zhu et al.(2011)
sna_SANGER_10_FBgn0003448
0.797
0.921
sna
M06071_2.00
Drosophila melanogaster
MCACCTGTYVHNNN
NNNDBRACAGGTGK
B1H
Zhu et al.(2011)
sna_SOLEXA_5_FBgn0003448
0.797
0.921
sna
M09664_2.00
Drosophila melanogaster
VMACCTGYB
VRCAGGTKB
Misc
Kulakovskiy et al.(2009)
sna
0.797
0.921
sna
M10375_2.00
Drosophila melanogaster
NKRCACCTGTYNB
VNRACAGGTGYMN
Transfac
Matys et al.(2006)
I$SN_01
0.797
0.921
sna
M10376_2.00
Drosophila melanogaster
WSBHADCAVSTKSK
MSMASBTGHTDVSW
Transfac
Matys et al.(2006)
I$SN_02
0.797
0.921
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LCUP006861-PA
C2H2 ZF
270
292
FKCDKCNKMYSTSMGLSKHQQFH
LCUP006861-PA
C2H2 ZF
305
327
HACQDCGKLYTTMGALKMHIRTH
LCUP006861-PA
C2H2 ZF
331
353
CKCPICGKAFSRPWLLQGHIRTH
LCUP006861-PA
C2H2 ZF
359
381
FQCPDCPRSFADRSNLRAHQQTH
LCUP006861-PA
C2H2 ZF
387
408
YACKVCHKSFSRMSLLNKHASS
Links
Other
C2H2 ZF
family TFs
Other
Lucilia cuprina
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POU6F2
Homo sapiens
ENSG00000106536
D
0.000
Brh_R001259
Buceros rhinoceros
Brh_R001259
I
0.000
ENSOGAG00000033061
Otolemur garnettii
ENSOGAG00000033061
I
0.000
ENSPANG00000007998
Papio anubis
ENSPANG00000007998
I
0.000
ENSPSIG00000017568
Pelodiscus sinensis
ENSPSIG00000017568
I
0.000
POU6F2
Pan troglodytes
ENSPTRG00000019105
I
0.000
POU6F2
Pteropus vampyrus
ENSPVAG00000012960
I
0.000
Pou6f2
Rattus norvegicus
ENSRNOG00000013237
I
0.000
ENSSTOG00000023336
Ictidomys tridecemlineatus
ENSSTOG00000023336
I
0.000
POU6F2
Taeniopygia guttata
ENSTGUG00000001859
I
0.000
Aan_R014018
Calypte anna
Aan_R014018
I
0.000
Afo_R007505
Aptenodytes forsteri
Afo_R007505
I
0.000
ENSNLEG00000003036
Nomascus leucogenys
ENSNLEG00000003036
I
0.000
ENSP00000395926-D1
Bos grunniens
ENSP00000395926-D1
I
0.000
ENSP00000395926
Macaca fascicularis
ENSP00000395926
I
0.000
Gfo_R007861
Geospiza fortis
Gfo_R007861
I
0.000
Myotis_brandtii_POU6F2_10011220
Myotis brandtii
Myotis_brandtii_POU6F2_10011220
I
0.000
Ogr18087
Ophisaurus gracilis
Ogr18087
I
0.000
Pvit_04153
Pogona vitticeps
Pvit_04153
I
0.000
Tal_R002298
Tyto alba
Tal_R002298
I
0.000
pou6f2
Xenopus tropicalis
XB-GENE-853682
I
0.000
ENSLACG00000002338
Latimeria chalumnae
ENSLACG00000002338
I
0.000
POU6F2
Canis familiaris
ENSCAFG00000003571
I
0.000
ENSCPOG00000012221
Cavia porcellus
ENSCPOG00000012221
I
0.000
ENSCSAG00000015201
Chlorocebus sabaeus
ENSCSAG00000015201
I
0.000
POU6F2
Equus caballus
ENSECAG00000013209
I
0.000
POU6F2
Erinaceus europaeus
ENSEEUG00000006653
I
0.000
POU6F2
Echinops telfairi
ENSETEG00000016373
I
0.000
ENSFALG00000005224
Ficedula albicollis
ENSFALG00000005224
I
0.000
ENSFCAG00000008102
Felis catus
ENSFCAG00000008102
I
0.000
POU6F2
Gorilla gorilla
ENSGGOG00000006718
I
0.000
ENSOARG00000017698
Ovis aries
ENSOARG00000017698
I
0.000
POU6F2
Loxodonta africana
ENSLAFG00000008294
I
0.000
ENSLOCG00000011317
Lepisosteus oculatus
ENSLOCG00000011317
I
0.000
ENSMGAG00000012235
Meleagris gallopavo
ENSMGAG00000012235
I
0.000
POU6F2
Microcebus murinus
ENSMICG00000007361
I
0.000
ENSMLUG00000002698
Myotis lucifugus
ENSMLUG00000002698
I
0.000
POU6F2
Macaca mulatta
ENSMMUG00000017106
I
0.000
ENSMPUG00000018132
Mustela putorius furo
ENSMPUG00000018132
I
0.000
Pou6f2
Mus musculus
ENSMUSG00000009734
I
0.000
ENSAPLG00000005140
Anas platyrhynchos
ENSAPLG00000005140
I
0.000