CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ctcf.L *(Xenopus laevis)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	XB-GENE-864809	T145602_2.00	Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
CTCF M08238_2.00	Homo sapiens	GCGCCCYCTGSYGGY	RCCRSCAGRGGGCGC	ChIP-seq Najafabadi et al.(2015b) CTCF	0.822	0.988
CTCF M02878_2.00	Homo sapiens	WGCGCCMYCTAGYGGYV	BRCCRCTAGRKGGCGCW	SELEX Jolma et al.(2013) CTCF_1	0.822	0.984
CTCF M05846_2.00	Homo sapiens	NNNNHBNVCKCCCCCHD	HDGGGGGMGBNVDNNNN	SMiLE-seq Isakova et al.(2017) CTCF	0.822	0.984
CTCF M08289_2.00	Homo sapiens	VGCGCCMCCTVSHGG	CCDSBAGGKGGCGCB	ChIP-seq Schmitges et al.(2016) P49711_3-7.RCADE	0.822	0.984
CTCF M07550_2.00	Homo sapiens	SYGCCMYCTDSTGGH	DCCASHAGRKGGCRS	ChIP-exo Rhee et al.(2011) CTCF_1	0.822	0.984
CTCF M07551_2.00	Homo sapiens	YTTTTDTTTTT	AAAAAHAAAAR	ChIP-exo Rhee et al.(2011) CTCF_2	0.822	0.984
CTCF M07552_2.00	Homo sapiens	AVACAGARDTCCHYTSTGT	ACASARDGGAHYTCTGTBT	ChIP-exo Rhee et al.(2011) CTCF_3	0.822	0.984
CTCF M08087_2.00	Homo sapiens	BRSYGCCMYCTRSTGGYNR	YNRCCASYAGRKGGCRSYV	ChIP-seq Mathelier et al.(2014) MA0139.1	0.822	0.984
CTCF M07862_2.00	Homo sapiens	VBRSYGCCMYCTRSYGGHNVN	NBNDCCRSYAGRKGGCRSYVB	ChIP-seq Gerstein et al.(2012) A549_CTCF_HudsonAlpha	0.822	0.984
CTCF M07863_2.00	Homo sapiens	BRSYGCCMYCTRSYGG	CCRSYAGRKGGCRSYV	ChIP-seq Gerstein et al.(2012) AG04449_CTCF_UW	0.822	0.984
CTCF M07864_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) AG04450_CTCF_UW	0.822	0.984
CTCF M07865_2.00	Homo sapiens	VBRSYGCCMYCTRSTG	CASYAGRKGGCRSYVB	ChIP-seq Gerstein et al.(2012) AG09309_CTCF_UW	0.822	0.984
CTCF M07866_2.00	Homo sapiens	SYGCCMYCTRSTGGY	RCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) AG09319_CTCF_UW	0.822	0.984
CTCF M07867_2.00	Homo sapiens	GCCMYCTDSTGGH	DCCASHAGRKGGC	ChIP-seq Gerstein et al.(2012) AG10803_CTCF_UW	0.822	0.984
CTCF M07868_2.00	Homo sapiens	SYGCCMYCTRSTGGY	RCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) AoAF_CTCF_UW	0.822	0.984
CTCF M07869_2.00	Homo sapiens	SYGCCMYCTRSYGGY	RCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) BJ_CTCF_UW	0.822	0.984
CTCF M07870_2.00	Homo sapiens	SYGCCMYCTRSTGGY	RCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) Caco-2_CTCF_UW	0.822	0.984
CTCF M07871_2.00	Homo sapiens	GCCMYCTRSTGGYVR	YBRCCASYAGRKGGC	ChIP-seq Gerstein et al.(2012) Fibrobl_CTCF_UT-A	0.822	0.984
CTCF M07872_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) Gliobla_CTCF_UT-A	0.822	0.984
CTCF M07873_2.00	Homo sapiens	BNNBRSYGCCMYCTRSYGGYN	NRCCRSYAGRKGGCRSYVNNV	ChIP-seq Gerstein et al.(2012) GM06990_CTCF_UW	0.822	0.984
CTCF M07874_2.00	Homo sapiens	RSYGCCMYCTRSYGG	CCRSYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) GM12864_CTCF_UW	0.822	0.984
CTCF M07875_2.00	Homo sapiens	SYGCCMYCTRSYGGY	RCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) GM12865_CTCF_UW	0.822	0.984
CTCF M07876_2.00	Homo sapiens	SYGCCMYCTRSYGGY	RCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) GM12872_CTCF_UW	0.822	0.984
CTCF M07877_2.00	Homo sapiens	RSYGCCMYCTRSYGG	CCRSYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) GM12873_CTCF_UW	0.822	0.984
CTCF M07878_2.00	Homo sapiens	SYGCCMYCTRSYGGY	RCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) GM12874_CTCF_UW	0.822	0.984
CTCF M07879_2.00	Homo sapiens	SYGCCMYCTRSYGGY	RCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) GM12875_CTCF_UW	0.822	0.984
CTCF M07880_2.00	Homo sapiens	GCCMYCTRSTGGYNR	YNRCCASYAGRKGGC	ChIP-seq Gerstein et al.(2012) GM12878_CTCF_Broad	0.822	0.984
CTCF M07881_2.00	Homo sapiens	YGCCMYCTRSTGGHN	NDCCASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) GM12878_CTCF_Stanford	0.822	0.984
CTCF M07882_2.00	Homo sapiens	YGCCMYCTRSTG	CASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) GM12878_CTCF_UT-A	0.822	0.984
CTCF M07883_2.00	Homo sapiens	BRSYGCCMYCTRSTGGY	RCCASYAGRKGGCRSYV	ChIP-seq Gerstein et al.(2012) GM12878_CTCF_UW	0.822	0.984
CTCF M07884_2.00	Homo sapiens	SYGCCMYCTRSTGGH	DCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) H1-hESC_CTCF_Broad	0.822	0.984
CTCF M07885_2.00	Homo sapiens	SYGCCMYCTRSYGGH	DCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) H1-hESC_CTCF_HudsonAlpha	0.822	0.984
CTCF M07886_2.00	Homo sapiens	SYGCCMYCTRSTGGY	RCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) HA-sp_CTCF_UW	0.822	0.984
CTCF M07887_2.00	Homo sapiens	RSYGCCMYCTDSTGGYNR	YNRCCASHAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) HBMEC_CTCF_UW	0.822	0.984
CTCF M07888_2.00	Homo sapiens	YGCCMYCTRSTGGYN	NRCCASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) HCFaa_CTCF_UW	0.822	0.984
CTCF M07889_2.00	Homo sapiens	YGCCMYCTDSTGGY	RCCASHAGRKGGCR	ChIP-seq Gerstein et al.(2012) HCPEpiC_CTCF_UW	0.822	0.984
CTCF M07890_2.00	Homo sapiens	YGCCMYCTRSTGG	CCASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) HEEpiC_CTCF_UW	0.822	0.984
CTCF M07891_2.00	Homo sapiens	RSYGCCMYCTRSTGGYNR	YNRCCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) HEK293_CTCF_UW	0.822	0.984
CTCF M07892_2.00	Homo sapiens	DSYGCCMYCTRSTGG	CCASYAGRKGGCRSH	ChIP-seq Gerstein et al.(2012) HeLa-S3_CTCF_Broad	0.822	0.984
CTCF M07893_2.00	Homo sapiens	SYGCCMYCTRSTGGY	RCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) HeLa-S3_CTCF_UT-A	0.822	0.984
CTCF M07894_2.00	Homo sapiens	VBRSYGCCMYCTRSYGG	CCRSYAGRKGGCRSYVB	ChIP-seq Gerstein et al.(2012) HeLa-S3_CTCF_UW	0.822	0.984
CTCF M07895_2.00	Homo sapiens	VBRSYGCCMYCTRSTGGY	RCCASYAGRKGGCRSYVB	ChIP-seq Gerstein et al.(2012) HepG2_CTCF_Broad	0.822	0.984
CTCF M07896_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) HepG2_CTCF_HudsonAlpha	0.822	0.984
CTCF M07897_2.00	Homo sapiens	RSYGCCMYCTDSTGG	CCASHAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) HepG2_CTCF_UT-A	0.822	0.984
CTCF M07898_2.00	Homo sapiens	YGCCMYCTRSTGGY	RCCASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) HepG2_CTCF_UW	0.822	0.984
CTCF M07899_2.00	Homo sapiens	VBRSYGCCMYCTRSTGGYNR	YNRCCASYAGRKGGCRSYVB	ChIP-seq Gerstein et al.(2012) HMEC_CTCF_Broad	0.822	0.984
CTCF M07900_2.00	Homo sapiens	VBRSYGCCMYCTRSTGG	CCASYAGRKGGCRSYVB	ChIP-seq Gerstein et al.(2012) HMEC_CTCF_UW	0.822	0.984
CTCF M07901_2.00	Homo sapiens	CCMYCTRSTGG	CCASYAGRKGG	ChIP-seq Gerstein et al.(2012) HMF_CTCF_UW	0.822	0.984
CTCF M07902_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) HPAF_CTCF_UW	0.822	0.984
CTCF M07903_2.00	Homo sapiens	YGCCMYCTDSTGG	CCASHAGRKGGCR	ChIP-seq Gerstein et al.(2012) HPF_CTCF_UW	0.822	0.984
CTCF M07904_2.00	Homo sapiens	SYGCCMYCTRSTGGY	RCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) HRE_CTCF_UW	0.822	0.984
CTCF M07905_2.00	Homo sapiens	YGCCMYCTRSTG	CASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) HRPEpiC_CTCF_UW	0.822	0.984
CTCF M07906_2.00	Homo sapiens	NNBRSYGCCMYCTDSTGG	CCASHAGRKGGCRSYVNN	ChIP-seq Gerstein et al.(2012) HSMM_CTCF_Broad	0.822	0.984
CTCF M07907_2.00	Homo sapiens	BRSYGCCMYCTDSTGGYN	NRCCASHAGRKGGCRSYV	ChIP-seq Gerstein et al.(2012) HSMMtube_CTCF_Broad	0.822	0.984
CTCF M07908_2.00	Homo sapiens	NVBRSYGCCMYCTRSYGGYNV	BNRCCRSYAGRKGGCRSYVBN	ChIP-seq Gerstein et al.(2012) HUVEC_CTCF_Broad	0.822	0.984
CTCF M07909_2.00	Homo sapiens	RSYRCCMYCTRSTGG	CCASYAGRKGGYRSY	ChIP-seq Gerstein et al.(2012) HUVEC_CTCF_UT-A	0.822	0.984
CTCF M07910_2.00	Homo sapiens	BNVBRSYGCCMYCTRSYGGH	DCCRSYAGRKGGCRSYVBNV	ChIP-seq Gerstein et al.(2012) HUVEC_CTCF_UW	0.822	0.984
CTCF M07911_2.00	Homo sapiens	RSYGCCMYCTRSYGGYNR	YNRCCRSYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) K562_CTCF_Broad	0.822	0.984
CTCF M07912_2.00	Homo sapiens	SYGCCMYCTDSTGGY	RCCASHAGRKGGCRS	ChIP-seq Gerstein et al.(2012) K562_CTCF_UT-A	0.822	0.984
CTCF M07913_2.00	Homo sapiens	SYGCCMYCTRSYGGY	RCCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) K562_CTCF_UW	0.822	0.984
CTCF M07914_2.00	Homo sapiens	SYGCCMYCTRSTGGH	DCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) MCF-7_CTCF_UT-A	0.822	0.984
CTCF M07915_2.00	Homo sapiens	BRSYGCCMYCTDSTGGYNRNN	NNYNRCCASHAGRKGGCRSYV	ChIP-seq Gerstein et al.(2012) NH-A_CTCF_Broad	0.822	0.984
CTCF M07916_2.00	Homo sapiens	BRSYGCCMYCTDSTGGY	RCCASHAGRKGGCRSYV	ChIP-seq Gerstein et al.(2012) NHDF-Ad_CTCF_Broad	0.822	0.984
CTCF M07917_2.00	Homo sapiens	SYGCCMYCTRSTGGH	DCCASYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) NHEK_CTCF_Broad	0.822	0.984
CTCF M07918_2.00	Homo sapiens	SYGCCMYCTRSYGG	CCRSYAGRKGGCRS	ChIP-seq Gerstein et al.(2012) NHEK_CTCF_UW	0.822	0.984
CTCF M07919_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) NHLF_CTCF_Broad	0.822	0.984
CTCF M07920_2.00	Homo sapiens	DSYGCCMYCTDSTGGYNR	YNRCCASHAGRKGGCRSH	ChIP-seq Gerstein et al.(2012) Osteobl_CTCF_Broad	0.822	0.984
CTCF M07921_2.00	Homo sapiens	YGCCMYCTRSTGGYV	BRCCASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) ProgFib_CTCF_UT-A	0.822	0.984
CTCF M07922_2.00	Homo sapiens	YGCCMYCTRSYGG	CCRSYAGRKGGCR	ChIP-seq Gerstein et al.(2012) SAEC_CTCF_UW	0.822	0.984
CTCF M07923_2.00	Homo sapiens	YGCCMYCTRSTGGYN	NRCCASYAGRKGGCR	ChIP-seq Gerstein et al.(2012) SK-N-SH_RA_UW	0.822	0.984
CTCF M07924_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) T-47D_CTCF_HudsonAlpha	0.822	0.984
CTCF M07925_2.00	Homo sapiens	RSYGCCMYCTRSTGG	CCASYAGRKGGCRSY	ChIP-seq Gerstein et al.(2012) WERI-Rb-1_CTCF_UW	0.822	0.984
Ctcf M08022_2.00	Mus musculus	RSYGCCMYCTDSTGG	CCASHAGRKGGCRSY	ChIP-seq Chen et al.(2011) SRP000217_Ctcf	0.822	0.984
CTCF M08869_2.00	Homo sapiens	BRSYGCCMYCTRSYGGYNR	YNRCCRSYAGRKGGCRSYV	Misc Kulakovskiy et al.(2013) CTCF_HUMAN.H11MO.0.A	0.822	0.984
Ctcf M08966_2.00	Mus musculus	VBRSYGCCMYCTRSYGGYNR	YNRCCRSYAGRKGGCRSYVB	Misc Kulakovskiy et al.(2013) CTCF_MOUSE.H11MO.0.A	0.822	0.984
CTCF M09503_2.00	Homo sapiens	NBRSYGCCMYCTRSTGGHHR	YDDCCASYAGRKGGCRSYVN	Misc Heinz et al.(2010) CD4+-CTCF_Barski_et_al._1	0.822	0.984
CTCF M09504_2.00	Homo sapiens	TGCAGTDCCNVNNNYDRCCA	TGGYHRNNNBNGGHACTGCA	Misc Heinz et al.(2010) CD4+-CTCF_Barski_et_al._2	0.822	0.984
CTCF M10152_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_01	0.822	0.984
CTCF M10153_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_02	0.822	0.984
CTCF M10154_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_05	0.822	0.984
CTCF M10155_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_06	0.822	0.984
CTCF M10156_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_07	0.822	0.984
CTCF M10157_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_08	0.822	0.984
CTCF M10158_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_10	0.822	0.984
CTCF M10159_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CTCF_Q3_01	0.822	0.984
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
AAG40852	C2H2 ZF	264	286	FQCELCSYTCPRRSNLDRHMKSH
AAG40852	C2H2 ZF	292	314	HKCHLCGRAFRTVTLLRNHLNTH
AAG40852	C2H2 ZF	320	343	HKCPDCDMAFVTSGELVRHRRYKH
AAG40852	C2H2 ZF	349	371	FKCSMCDYASVEVSKLKRHIRSH
AAG40852	C2H2 ZF	377	399	FQCSLCSYASRDTYKLKRHMRTH
AAG40852	C2H2 ZF	405	428	YECYICHARFTQSGTMKMHILQKH
AAG40852	C2H2 ZF	435	458	FHCPHCDTVIARKSDLGVHLRKQH
AAG40852	C2H2 ZF	465	487	KKCRYCDTVFHERYALIQHQKSH
AAG40852	C2H2 ZF	493	515	FKCDQCEYACRQERHMIMHKRTH
AAG40852	C2H2 ZF	521	544	YACSHCDKTFRQKQLLDMHFKRYH
AAG40852	C2H2 ZF	553	574	FVCSKCGKTFTRRNTMSRHADS
AAH57697	C2H2 ZF	264	286	FQCELCSYTCPRRSNLDRHMKSH
AAH57697	C2H2 ZF	292	314	HKCHLCGRAFRTVTLLRNHLNTH
AAH57697	C2H2 ZF	320	343	HKCPDCDMAFVTSGELVRHRRYKH
AAH57697	C2H2 ZF	349	371	FKCSMCDYASVEVSKLKRHIRSH
AAH57697	C2H2 ZF	377	399	FQCSLCSYASRDTYKLKRHMRTH
AAH57697	C2H2 ZF	405	428	YECYICHARFTQSGTMKMHILQKH
AAH57697	C2H2 ZF	435	458	FHCPHCDTVIARKSDLGVHLRKQH
AAH57697	C2H2 ZF	465	487	KKCRYCDTVFHERYALIQHQKSH
AAH57697	C2H2 ZF	493	515	FKCDQCEYACRQERHMIMHKRTH
AAH57697	C2H2 ZF	521	544	YACSHCDKTFRQKQLLDMHFKRYH
AAH57697	C2H2 ZF	553	574	FVCSKCGKTFTRRNTMSRHADS

Links
Other C2H2 ZF family TFs
Other *Xenopus laevis* TFs

66 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
CJA36291	Caenorhabditis japonica	CJA36291	N	0.000
CRE10858	Caenorhabditis remanei	CRE10858	N	0.000
ALUE_0001621101	Ascaris lumbricoides	ALUE_0001621101	N	0.000
ANCCAN_05988	Ancylostoma caninum	ANCCAN_05988	N	0.000
ANCCEY_03973	Ancylostoma ceylanicum	ANCCEY_03973	N	0.000
ASU_01558	Ascaris suum	ASU_01558	N	0.000
BXY_0748700	Bursaphelenchus xylophilus	BXY_0748700	N	0.000
CGOC_0000108301	Cylicostephanus goldi	CGOC_0000108301	N	0.000
GPLIN_001350800	Globodera pallida	GPLIN_001350800	N	0.000
Hba_00666	Heterorhabditis bacteriophora	Hba_00666	N	0.000
L889_g3780	Steinernema feltiae	L889_g3780	N	0.000
PTRK_0000752800	Parastrongyloides trichosuri	PTRK_0000752800	N	0.000
TCNE_0001343401	Toxocara canis	TCNE_0001343401	N	0.000

ctcf.L (Xenopus laevis) C2H2 ZF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

66 Related TFs

ctcf.L **(Xenopus laevis)
C2H2 ZF**