PDK_20s1360411g001 (Phoenix dactylifera)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PDK_20s1360411g001 T146562_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBE
M01858_2.00 		Arabidopsis thaliana
NNNASWN
NWSTNNN		 PBM
Weirauch et al.(2014)
pTH7538 		0.779 0.870
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1360411g001 C2H2 ZF 45 67

Links

Other C2H2 ZF family TFs
Other Phoenix dactylifera TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PHL6 Arabidopsis thaliana AT3G13040 D
PHL11 Arabidopsis thaliana AT5G45580 D
PHR1 Oryza sativa OS03G0329900 D
AC233960.1_FG003 Zea mays AC233960.1_FG003 I
AMTR_s00025p00151950 Amborella trichopoda AMTR_s00025p00151950 I
AMTR_s00048p00192390 Amborella trichopoda AMTR_s00048p00192390 I
BGIOSGA005373 Oryza indica BGIOSGA005373 I
PHR3 Oryza indica BGIOSGA007162 I
BGIOSGA008875 Oryza indica BGIOSGA008875 I
PHR1 Oryza indica BGIOSGA012553 I
BGIOSGA017051 Oryza indica BGIOSGA017051 I
BGIOSGA023563 Oryza indica BGIOSGA023563 I
Bo7g072630 Brassica oleracea Bo7g072630 I
Bra025071 Brassica rapa Bra025071 I
BRADI1G34470 Brachypodium distachyon BRADI1G34470 I
BRADI1G63530 Brachypodium distachyon BRADI1G63530 I
BRADI3G03538 Brachypodium distachyon BRADI3G03538 I
BRADI5G20520 Brachypodium distachyon BRADI5G20520 I
F775_02978 Aegilops tauschii F775_02978 I
F775_12865 Aegilops tauschii F775_12865 I
F775_26343 Aegilops tauschii F775_26343 I
F775_29452 Aegilops tauschii F775_29452 I
fgenesh1_pg.C_scaffold_8000236 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8000236 I
GLYMA01G01300 Glycine max GLYMA01G01300 I
GLYMA09G34461 Glycine max GLYMA09G34461 I
GRMZM2G010920 Zea mays GRMZM2G010920 I
GRMZM2G125704 Zea mays GRMZM2G125704 I
GSMUA_Achr10G23260_001 Musa acuminata GSMUA_Achr10G23260_001 I
GSMUA_Achr11G06340_001 Musa acuminata GSMUA_Achr11G06340_001 I
GSMUA_Achr6G01310_001 Musa acuminata GSMUA_Achr6G01310_001 I
GSMUA_Achr7G15740_001 Musa acuminata GSMUA_Achr7G15740_001 I
GSMUA_AchrUn_randomG10390_001 Musa acuminata GSMUA_AchrUn_randomG10390_001 I
LPERR02G03030 Leersia perrieri LPERR02G03030 I
LPERR02G23680 Leersia perrieri LPERR02G23680 I
LPERR03G14050 Leersia perrieri LPERR03G14050 I
LPERR04G19690 Leersia perrieri LPERR04G19690 I
MLOC_14844 Hordeum vulgare MLOC_14844 I
MLOC_52706 Hordeum vulgare MLOC_52706 I
MLOC_54829 Hordeum vulgare MLOC_54829 I
MLOC_8187 Hordeum vulgare MLOC_8187 I
MTR_5g027440 Medicago truncatula MTR_5g027440 I
OB02G12880 Oryza brachyantha OB02G12880 I
OB02G36270 Oryza brachyantha OB02G36270 I
OB02G43730 Oryza brachyantha OB02G43730 I
OB03G25800 Oryza brachyantha OB03G25800 I
OB04G30960 Oryza brachyantha OB04G30960 I
OB06G34350 Oryza brachyantha OB06G34350 I
OBART02G03200 Oryza barthii OBART02G03200 I
OBART02G29100 Oryza barthii OBART02G29100 I
OBART04G24010 Oryza barthii OBART04G24010 I
OGLUM02G03100 Oryza glumaepatula OGLUM02G03100 I
OGLUM02G29720 Oryza glumaepatula OGLUM02G29720 I
OGLUM04G23960 Oryza glumaepatula OGLUM04G23960 I
OLONG_005622 Oryza longistaminata OLONG_005622 I
OLONG_010553 Oryza longistaminata OLONG_010553 I
OMERI02G03860 Oryza meridionalis OMERI02G03860 I
OMERI03G14370 Oryza meridionalis OMERI03G14370 I
ONIVA02G03010 Oryza nivara ONIVA02G03010 I
ONIVA02G31870 Oryza nivara ONIVA02G31870 I
ONIVA03G17050 Oryza nivara ONIVA03G17050 I
ONIVA04G23170 Oryza nivara ONIVA04G23170 I
OPUNC02G02530 Oryza punctata OPUNC02G02530 I
OPUNC02G26700 Oryza punctata OPUNC02G26700 I
OPUNC03G15590 Oryza punctata OPUNC03G15590 I
OPUNC04G21550 Oryza punctata OPUNC04G21550 I
ORGLA02G0030200 Oryza glaberrima ORGLA02G0030200 I
ORGLA02G0249400 Oryza glaberrima ORGLA02G0249400 I
ORGLA03G0154000 Oryza glaberrima ORGLA03G0154000 I
ORGLA04G0205700 Oryza glaberrima ORGLA04G0205700 I
ORGLA06G0222600 Oryza glaberrima ORGLA06G0222600 I
ORUFI02G03130 Oryza rufipogon ORUFI02G03130 I
ORUFI02G30700 Oryza rufipogon ORUFI02G30700 I
ORUFI02G38560 Oryza rufipogon ORUFI02G38560 I
ORUFI04G25750 Oryza rufipogon ORUFI04G25750 I
PHR3 Oryza sativa OS02G0139000 I
OS02G0700300 Oryza sativa OS02G0700300 I
OS04G0600000 Oryza sativa OS04G0600000 I
OS06G0703900 Oryza sativa OS06G0703900 I
PGSC0003DMG400009304 Solanum tuberosum PGSC0003DMG400009304 I
PGSC0003DMG400020455 Solanum tuberosum PGSC0003DMG400020455 I
PGSC0003DMG400023467 Solanum tuberosum PGSC0003DMG400023467 I
POPTR_0001s01560 Populus trichocarpa POPTR_0001s01560 I
POPTR_0003s09940 Populus trichocarpa POPTR_0003s09940 I
POPTR_0007s15110 Populus trichocarpa POPTR_0007s15110 I
POPTR_0014s00280 Populus trichocarpa POPTR_0014s00280 I
PRUPE_ppa005159mg Prunus persica PRUPE_ppa005159mg I
PRUPE_ppa009898mg Prunus persica PRUPE_ppa009898mg I
PRUPE_ppa023008mg Prunus persica PRUPE_ppa023008mg I
Sb04g030830 Sorghum bicolor Sb04g030830 I
Sb06g027405 Sorghum bicolor Sb06g027405 I
Sb10g029200 Sorghum bicolor Sb10g029200 I
SELMODRAFT_438638 Selaginella moellendorffii SELMODRAFT_438638 I
SELMODRAFT_447259 Selaginella moellendorffii SELMODRAFT_447259 I
Si006354m.g Setaria italica Si006354m.g I
Si010794m.g Setaria italica Si010794m.g I
Si017191m.g Setaria italica Si017191m.g I
Si018049m.g Setaria italica Si018049m.g I
Solyc04g050070.1 Solanum lycopersicum Solyc04g050070.1 I
Solyc05g055940.2 Solanum lycopersicum Solyc05g055940.2 I
Solyc06g008200.2 Solanum lycopersicum Solyc06g008200.2 I
Solyc06g066180.2 Solanum lycopersicum Solyc06g066180.2 I
Solyc08g076010.2 Solanum lycopersicum Solyc08g076010.2 I
Solyc09g072830.2 Solanum lycopersicum Solyc09g072830.2 I
TCM_016647 Theobroma cacao TCM_016647 I
TCM_027630 Theobroma cacao TCM_027630 I
Traes_2AL_8D3A3687D Triticum aestivum Traes_2AL_8D3A3687D I
Traes_2AS_28B163E7C Triticum aestivum Traes_2AS_28B163E7C I
Traes_2BL_FA727026F Triticum aestivum Traes_2BL_FA727026F I
Traes_2BS_34669CA7B Triticum aestivum Traes_2BS_34669CA7B I
Traes_2DS_8EA143F67 Triticum aestivum Traes_2DS_8EA143F67 I
Traes_6AL_72D2B7C35 Triticum aestivum Traes_6AL_72D2B7C35 I
Traes_6BL_5D8EE6802 Triticum aestivum Traes_6BL_5D8EE6802 I
Traes_6DL_EAF038D23 Triticum aestivum Traes_6DL_EAF038D23 I
Traes_7AL_D45376F32 Triticum aestivum Traes_7AL_D45376F32 I
Traes_7BL_09DD5A1DC Triticum aestivum Traes_7BL_09DD5A1DC I
Traes_7DL_090D0E08E Triticum aestivum Traes_7DL_090D0E08E I
TRIUR3_02291 Triticum urartu TRIUR3_02291 I
TRIUR3_16070 Triticum urartu TRIUR3_16070 I
TRIUR3_32904 Triticum urartu TRIUR3_32904 I
VIT_02s0033g00300 Vitis vinifera VIT_02s0033g00300 I
VIT_09s0054g01620 Vitis vinifera VIT_09s0054g01620 I
Ca_11432 Cicer arietinum Ca_11432 I
Cla002725 Citrullus lanatus Cla002725 I
Cla003565 Citrullus lanatus Cla003565 I
Cla006047 Citrullus lanatus Cla006047 I
Pm013132 Prunus mume Pm013132 I
Pm023092 Prunus mume Pm023092 I
29680.m001711 Ricinus communis 29680.m001711 I
29827.m002675 Ricinus communis 29827.m002675 I
30169.m006598 Ricinus communis 30169.m006598 I
cassava22661.valid.m1 Manihot esculenta cassava22661.valid.m1 I
cassava35979.valid.m1 Manihot esculenta cassava35979.valid.m1 I
cassava35980.valid.m1 Manihot esculenta cassava35980.valid.m1 I
cassava39270.m1 Manihot esculenta cassava39270.m1 I
cassava44101.valid.m1 Manihot esculenta cassava44101.valid.m1 I
cassava9333.m1 Manihot esculenta cassava9333.m1 I
Cucsa.027530 Cucumis sativus Cucsa.027530 I
Cucsa.037070 Cucumis sativus Cucsa.037070 I
Cucsa.149820 Cucumis sativus Cucsa.149820 I
estExt_fgenesh1_pg.C_90140 Physcomitrella patens estExt_fgenesh1_pg.C_90140 I
fgenesh1_pg.scaffold_143000021 Physcomitrella patens fgenesh1_pg.scaffold_143000021 I
fgenesh1_pg.scaffold_391000034 Physcomitrella patens fgenesh1_pg.scaffold_391000034 I
mgf004470m Mimulus guttatus mgf004470m I
mgf005047m Mimulus guttatus mgf005047m I
mgf011847m Mimulus guttatus mgf011847m I
Aquca_017_00793 Aquilegia coerulea Aquca_017_00793 I
Bostr.3640s0078 Boechera stricta Bostr.3640s0078 I
Bostr.8819s0083 Boechera stricta Bostr.8819s0083 I
Cagra.0796s0026 Capsella grandiflora Cagra.0796s0026 I
Cagra.5641s0065 Capsella grandiflora Cagra.5641s0065 I
Carubv10013698m.g Capsella rubella Carubv10013698m.g I
Carubv10027834m.g Capsella rubella Carubv10027834m.g I
Ciclev10002089m.g Citrus clementina Ciclev10002089m.g I
Ciclev10030185m.g Citrus clementina Ciclev10030185m.g I
Eucgr.A01323 Eucalyptus grandis Eucgr.A01323 I
Eucgr.F04055 Eucalyptus grandis Eucgr.F04055 I
evm.TU.supercontig_10.14 Carica papaya evm.TU.supercontig_10.14 I
evm.TU.supercontig_87.3 Carica papaya evm.TU.supercontig_87.3 I
gene05518-v1.0-hybrid Fragaria vesca gene05518-v1.0-hybrid I
gene13545-v1.0-hybrid Fragaria vesca gene13545-v1.0-hybrid I
gene18340-v1.0-hybrid Fragaria vesca gene18340-v1.0-hybrid I
Gorai.004G180000 Gossypium raimondii Gorai.004G180000 I
Gorai.008G221900 Gossypium raimondii Gorai.008G221900 I
Gorai.009G120900 Gossypium raimondii Gorai.009G120900 I
Gorai.011G001500 Gossypium raimondii Gorai.011G001500 I
Lus10010404.g Linum usitatissimum Lus10010404.g I
Lus10012142.g Linum usitatissimum Lus10012142.g I
Lus10035705.g Linum usitatissimum Lus10035705.g I
Lus10037296.g Linum usitatissimum Lus10037296.g I
MDP0000241055 Malus domestica MDP0000241055 I
MDP0000773970 Malus domestica MDP0000773970 I
MDP0000920870 Malus domestica MDP0000920870 I
orange1.1g011006m.g Citrus sinensis orange1.1g011006m.g I
orange1.1g023210m.g Citrus sinensis orange1.1g023210m.g I
Pavir.Aa00783 Panicum virgatum Pavir.Aa00783 I
Pavir.Aa03223 Panicum virgatum Pavir.Aa03223 I
Pavir.Ab02790 Panicum virgatum Pavir.Ab02790 I
Pavir.Bb03727 Panicum virgatum Pavir.Bb03727 I
Pavir.Db00228 Panicum virgatum Pavir.Db00228 I
Pavir.Ga00732 Panicum virgatum Pavir.Ga00732 I
Pavir.Gb00791 Panicum virgatum Pavir.Gb00791 I
Pavir.J14911 Panicum virgatum Pavir.J14911 I
Pavir.J27649 Panicum virgatum Pavir.J27649 I
SapurV1A.0051s0450 Salix purpurea SapurV1A.0051s0450 I
SapurV1A.0063s0360 Salix purpurea SapurV1A.0063s0360 I
SapurV1A.0703s0050 Salix purpurea SapurV1A.0703s0050 I
Thhalv10001175m.g Eutrema salsugineum Thhalv10001175m.g I
PK01823.1 Cannabis sativa PK01823.1 I
PK02936.1 Cannabis sativa PK02936.1 I
chr2.CM0020.340.nc Lotus japonicus chr2.CM0020.340.nc I
PDK_20s1523411g004 Phoenix dactylifera PDK_20s1523411g004 I
AT2G06020 Arabidopsis thaliana AT2G06020 N
Bra015134 Brassica rapa Bra015134 N
fgenesh1_pm.C_scaffold_3002359 Arabidopsis lyrata fgenesh1_pm.C_scaffold_3002359 N
Bostr.24399s0035 Boechera stricta Bostr.24399s0035 N
Carubv10016382m.g Capsella rubella Carubv10016382m.g N
Gorai.001G225500 Gossypium raimondii Gorai.001G225500 N
Thhalv10002873m.g Eutrema salsugineum Thhalv10002873m.g N