L892_g9690 (Steinernema scapterisci)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 L892_g9690 T154617_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.768 0.754
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.768 0.754
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.768 0.754
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.768 0.754
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.763 0.781
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.763 0.781
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.763 0.781
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.763 0.781
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.763 0.763
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.763 0.763
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.763 0.763
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L892_g9690.t1 C2H2 ZF 173 195
L892_g9690.t1 C2H2 ZF 204 226
L892_g9690.t1 C2H2 ZF 230 252
L892_g9690.t1 C2H2 ZF 258 280
L892_g9690.t1 C2H2 ZF 286 307

Links

Other C2H2 ZF family TFs
Other Steinernema scapterisci TFs

186 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMEC013076 Anopheles melas AMEC013076 I 0.759
CLEC001353 Cimex lectularius CLEC001353 I 0.759
HHAL001092-PA Halyomorpha halys HHAL001092-PA I 0.759
LCUP005777 Lucilia cuprina LCUP005777 I 0.763
AATE020159 Anopheles atroparvus AATE020159 I 0.759
ACHR010032 Anopheles christyi ACHR010032 I 0.759
ACOM031685 Anopheles coluzzii ACOM031685 I 0.759
ACUA022497 Anopheles culicifacies ACUA022497 I 0.759
AFAF007486 Anopheles farauti AFAF007486 I 0.759
AFUN002786 Anopheles funestus AFUN002786 I 0.759
AAEL005176 Aedes aegypti AAEL005176 I 0.759
AMEM013788 Anopheles merus AMEM013788 I 0.759
AQUA003879 Anopheles quadriannulatus AQUA003879 I 0.759
ASIS022059 Anopheles sinensis ASIS022059 I 0.759
MDOA001622 Musca domestica MDOA001622 I 0.761
D917_06340 Trichinella nativa D917_06340 I 0.761
D918_03987 Trichuris suis D918_03987 I 0.761
TMUE_s0027002700 Trichuris muris TMUE_s0027002700 I 0.761
TTRE_0000441701 Trichuris trichiura TTRE_0000441701 I 0.761
NEMVEDRAFT_v1g108258 Nematostella vectensis NEMVEDRAFT_v1g108258 I 0.761
CpipJ_CPIJ017517 Culex pipiens CpipJ_CPIJ017517 I 0.759
AGAP006791 Anopheles gambiae AGAP006791 I 0.759
PHUM474180 Pediculus humanus PHUM474180 I 0.759
BGIBMGA000607 Bombyx mori BGIBMGA000607 I 0.761
CPIJ017517 Culex quinquefasciatus CPIJ017517 I 0.759
EFV52761 Trichinella spiralis EFV52761 I 0.761
scrt2 Danio rerio ENSDARG00000056175 I 0.761
scrt2 Gasterosteus aculeatus ENSGACG00000011802 I 0.761
ENSLOCG00000002246 Lepisosteus oculatus ENSLOCG00000002246 I 0.759
ENSONIG00000003152 Oreochromis niloticus ENSONIG00000003152 I 0.761
ENSONIG00000016758 Oreochromis niloticus ENSONIG00000016758 I 0.761
ENSSHAG00000001992 Sarcophilus harrisii ENSSHAG00000001992 I 0.759
ENSXMAG00000011590 Xiphophorus maculatus ENSXMAG00000011590 I 0.763
HMEL014701 Heliconius melpomene HMEL014701 I 0.759
KGM_21493 Danaus plexippus KGM_21493 I 0.759
L798_11766 Zootermopsis nevadensis L798_11766 I 0.759
MCINX009925 Melitaea cinxia MCINX009925 I 0.759
SCRT1 Macaca mulatta ENSMMUG00000028886 I 0.762
OPUNC04G20980 Oryza punctata OPUNC04G20980 N
ORGLA04G0200000 Oryza glaberrima ORGLA04G0200000 N
ORUFI04G25140 Oryza rufipogon ORUFI04G25140 N
OS04G0590400 Oryza sativa OS04G0590400 N
Sb01g003110 Sorghum bicolor Sb01g003110 N
Si034627m.g Setaria italica Si034627m.g N
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N
Traes_5AL_9AE0ED26A Triticum aestivum Traes_5AL_9AE0ED26A N
Traes_5BL_DF8EC4A24 Triticum aestivum Traes_5BL_DF8EC4A24 N
Pavir.Ia00281 Panicum virgatum Pavir.Ia00281 N
Pavir.J16240 Panicum virgatum Pavir.J16240 N
ONIVA04G22790 Oryza nivara ONIVA04G22790 N
OLONG_013234 Oryza longistaminata OLONG_013234 N
OGLUM04G23390 Oryza glumaepatula OGLUM04G23390 N
OBART04G23460 Oryza barthii OBART04G23460 N
OB04G30360 Oryza brachyantha OB04G30360 N
MLOC_2933 Hordeum vulgare MLOC_2933 N
LPERR04G19190 Leersia perrieri LPERR04G19190 N
GRMZM2G368909 Zea mays GRMZM2G368909 N
F775_04155 Aegilops tauschii F775_04155 N
BRADI1G03620 Brachypodium distachyon BRADI1G03620 N
BGIOSGA017023 Oryza indica BGIOSGA017023 N
EEL_0000648301 Elaeophora elaphi EEL_0000648301 N 0.759