L898_g8627 (Steinernema monticolum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 L898_g8627 T154828_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
erm
M03686_2.00 		Drosophila melanogaster
TGATTGCTCWTTT
AAAWGAGCAATCA		 SELEX
Nitta et al.(2015)
CG31670_1 		0.769 0.848
erm
M06128_2.00 		Drosophila melanogaster
KWTGYKCWTTT
AAAWGMRCAWM		 B1H
Zhu et al.(2011)
CG31670_SANGER_5_FBgn0031375 		0.769 0.848
erm
M06129_2.00 		Drosophila melanogaster
BBRTTGCTCWTTTBN
NVAAAWGAGCAAYVV		 B1H
Zhu et al.(2011)
CG31670_SOLEXA_5_FBgn0031375 		0.769 0.848
FEZF1
M08307_2.00 		Homo sapiens
NNBTGYYYTTTTNNN
NNNAAAARRRCAVNN		 ChIP-seq
Schmitges et al.(2016)
A0PJY2_1-5.RCADE 		0.768 0.848
FEZF1
M08889_2.00 		Homo sapiens
DYTGYYCWTTTN
NAAAWGRRCARH		 Misc
Kulakovskiy et al.(2013)
FEZF1_HUMAN.H11MO.0.C 		0.768 0.848
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L898_g8627.t1 C2H2 ZF 83 105
L898_g8627.t1 C2H2 ZF 111 133
L898_g8627.t1 C2H2 ZF 139 161
L898_g8627.t1 C2H2 ZF 167 189
L898_g8627.t1 C2H2 ZF 195 217
L898_g8627.t1 C2H2 ZF 223 246

Links

Other C2H2 ZF family TFs
Other Steinernema monticolum TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I 0.000
Aquca_015_00350 Aquilegia coerulea Aquca_015_00350 N 0.000
chr2.CM0272.20.nd Lotus japonicus chr2.CM0272.20.nd N 0.000
Bostr.7867s1419 Boechera stricta Bostr.7867s1419 N 0.000
Cagra.2350s0102 Capsella grandiflora Cagra.2350s0102 N 0.000
Carubv10005148m.g Capsella rubella Carubv10005148m.g N 0.000
Ciclev10027531m.g Citrus clementina Ciclev10027531m.g N 0.000
gene13055-v1.0-hybrid Fragaria vesca gene13055-v1.0-hybrid N 0.000
Gorai.003G002500 Gossypium raimondii Gorai.003G002500 N 0.000
MDP0000125133 Malus domestica MDP0000125133 N 0.000
MDP0000192895 Malus domestica MDP0000192895 N 0.000
MDP0000215412 Malus domestica MDP0000215412 N 0.000
MDP0000291622 Malus domestica MDP0000291622 N 0.000
orange1.1g039420m.g Citrus sinensis orange1.1g039420m.g N 0.000
SapurV1A.0085s0060 Salix purpurea SapurV1A.0085s0060 N 0.000
Thhalv10027037m.g Eutrema salsugineum Thhalv10027037m.g N 0.000
AMTR_s00044p00165760 Amborella trichopoda AMTR_s00044p00165760 N 0.000
Cucsa.044270 Cucumis sativus Cucsa.044270 N 0.000
cassava26650.m1 Manihot esculenta cassava26650.m1 N 0.000
29830.m001444 Ricinus communis 29830.m001444 N 0.000
Pm026816 Prunus mume Pm026816 N 0.000
VIT_04s0044g00060 Vitis vinifera VIT_04s0044g00060 N 0.000
TCM_000070 Theobroma cacao TCM_000070 N 0.000
PRUPE_ppa011563mg Prunus persica PRUPE_ppa011563mg N 0.000
POPTR_0005s10400 Populus trichocarpa POPTR_0005s10400 N 0.000
MTR_5g024070 Medicago truncatula MTR_5g024070 N 0.000
GSMUA_Achr8G13370_001 Musa acuminata GSMUA_Achr8G13370_001 N 0.000
GLYMA11G09080 Glycine max GLYMA11G09080 N 0.000
GLYMA01G36360 Glycine max GLYMA01G36360 N 0.000
fgenesh2_kg.7__520__AT4G35590.1 Arabidopsis lyrata fgenesh2_kg.7__520__AT4G35590.1 N 0.000
Bra011626 Brassica rapa Bra011626 N 0.000
Bo1g006340 Brassica oleracea Bo1g006340 N 0.000