nRc.2.0.1.g22231 (Romanomermis culicivorax)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nRc.2.0.1.g22231 T155476_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.769 0.795
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.769 0.795
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.769 0.795
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.767 0.795
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.767 0.795
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.767 0.795
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.767 0.795
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.765 0.795
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.765 0.795
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.765 0.795
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.765 0.795
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t22231-RA C2H2 ZF 189 211
nRc.2.0.1.t22231-RA C2H2 ZF 220 242
nRc.2.0.1.t22231-RA C2H2 ZF 246 268
nRc.2.0.1.t22231-RA C2H2 ZF 274 295
nRc.2.0.1.t22231-RA C2H2 ZF 321 341

Links

Other C2H2 ZF family TFs
Other Romanomermis culicivorax TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPMAG00000000497 Petromyzon marinus ENSPMAG00000000497 I
Sakowv30043886m.g Saccoglossus kowalevskii Sakowv30043886m.g I
Ocbimv22013214m.g Octopus bimaculoides Ocbimv22013214m.g I
LotgiG187172 Lottia gigantea LotgiG187172 I
L798_06852 Zootermopsis nevadensis L798_06852 N
MDOA000183 Musca domestica MDOA000183 N
CLEC008069 Cimex lectularius CLEC008069 N
Hsal_01990--XP_391891.1_APIME Harpegnathos saltator Hsal_01990--XP_391891.1_APIME N
Cflo_03461--XP_391891.1_APIME Camponotus floridanus Cflo_03461--XP_391891.1_APIME N
SINV25019 Solenopsis invicta SINV25019 N
NV13275 Nasonia vitripennis NV13275 N
ACEP15271 Atta cephalotes ACEP15271 N
ISCW004149 Ixodes scapularis ISCW004149 N
GB55193 Apis mellifera GB55193 N
GK18102 Drosophila willistoni FBgn0220101 N
GJ21463 Drosophila virilis FBgn0208589 N
GI24194 Drosophila mojavensis FBgn0146917 N
GH13580 Drosophila grimshawi FBgn0121056 N
DAPPUDRAFT_303802 Daphnia pulex DAPPUDRAFT_303802 N
CapteG214662 Capitella teleta CapteG214662 N