nRc.2.0.1.g30796 (Romanomermis culicivorax)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nRc.2.0.1.g30796 T155498_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SP3
M02910_2.00 		Homo sapiens
VCCMCRCCCMY
RKGGGYGKGGB		 SELEX
Jolma et al.(2013)
SP3_1 		0.770 0.797
SP3
M04558_2.00 		Homo sapiens
NRCCACGCCCMYH
DRKGGGCGTGGYN		 SELEX
Yin et al.(2017)
SP3_eDBD_HT-SELEX 		0.770 0.797
SP3
M08920_2.00 		Homo sapiens
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN		 Misc
Kulakovskiy et al.(2013)
SP3_HUMAN.H11MO.0.B 		0.770 0.797
Sp3
M08978_2.00 		Mus musculus
NBBNVSCCCCKCCCMBBBNN
NNVVVKGGGMGGGGSBNVVN		 Misc
Kulakovskiy et al.(2013)
SP3_MOUSE.H11MO.0.B 		0.770 0.797
SP3
M10263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP3_Q3_01 		0.770 0.797
SP3
M10264_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP3_Q3 		0.770 0.797
SP3
M04559_2.00 		Homo sapiens
NRCCMCGCCCMCH
DGKGGGCGKGGYN		 SELEX
Yin et al.(2017)
SP3_eDBD_Methyl-HT-SELEX 		0.770 0.797
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t30796-RA C2H2 ZF 606 630
nRc.2.0.1.t30796-RA C2H2 ZF 636 660
nRc.2.0.1.t30796-RA C2H2 ZF 666 688

Links

Other C2H2 ZF family TFs
Other Romanomermis culicivorax TFs

108 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SP3 Homo sapiens ENSG00000172845 D 0.770
Sp3 Mus musculus ENSMUSG00000027109 D 0.770
Aqu1.217456 Amphimedon queenslandica Aqu1.217456 I 0.757
SP3 Anolis carolinensis ENSACAG00000017061 I 0.770
ENSAMEG00000000258 Ailuropoda melanoleuca ENSAMEG00000000258 I 0.770
ENSAMXG00000004915 Astyanax mexicanus ENSAMXG00000004915 I 0.770
ENSAMXG00000011277 Astyanax mexicanus ENSAMXG00000011277 I 0.757
ENSAMXG00000015260 Astyanax mexicanus ENSAMXG00000015260 I 0.770
ENSAPLG00000008201 Anas platyrhynchos ENSAPLG00000008201 I 0.770
SP3 Bos taurus ENSBTAG00000000176 I 0.770
SP3 Canis familiaris ENSCAFG00000013169 I 0.770
SP3 Callithrix jacchus ENSCJAG00000007851 I 0.770
SP3 Cavia porcellus ENSCPOG00000002942 I 0.770
ENSCSAG00000014689 Chlorocebus sabaeus ENSCSAG00000014689 I 0.770
sp3a Danio rerio ENSDARG00000001549 I 0.770
sp3b Danio rerio ENSDARG00000007812 I 0.770
sp5a Danio rerio ENSDARG00000076571 I 0.757
SP3 Dasypus novemcinctus ENSDNOG00000048996 I 0.770
Sp3 Dipodomys ordii ENSDORG00000009045 I 0.770
SP3 Equus caballus ENSECAG00000013930 I 0.770
SP3 Erinaceus europaeus ENSEEUG00000005069 I 0.770
ENSFALG00000001963 Ficedula albicollis ENSFALG00000001963 I 0.756
ENSFALG00000002922 Ficedula albicollis ENSFALG00000002922 I 0.770
SP3 Felis catus ENSFCAG00000030033 I 0.770
sp3a Gasterosteus aculeatus ENSGACG00000004770 I 0.770
sp5a Gasterosteus aculeatus ENSGACG00000005058 I 0.757
ENSGACG00000006667 Gasterosteus aculeatus ENSGACG00000006667 I 0.757
sp3b Gasterosteus aculeatus ENSGACG00000010072 I 0.770
ENSGALG00000009327 Gallus gallus ENSGALG00000009327 I 0.770
ENSGALG00000027511 Gallus gallus ENSGALG00000027511 I 0.757
ENSGGOG00000011699 Gorilla gorilla ENSGGOG00000011699 I 0.770
ENSGGOG00000022614 Gorilla gorilla ENSGGOG00000022614 I 0.757
ENSGMOG00000000587 Gadus morhua ENSGMOG00000000587 I 0.770
ENSGMOG00000002497 Gadus morhua ENSGMOG00000002497 I 0.757
ENSLACG00000001435 Latimeria chalumnae ENSLACG00000001435 I 0.757
ENSLACG00000010415 Latimeria chalumnae ENSLACG00000010415 I 0.770
ENSLACG00000011942 Latimeria chalumnae ENSLACG00000011942 I 0.757
SP3 Loxodonta africana ENSLAFG00000013121 I 0.770
ENSLOCG00000007414 Lepisosteus oculatus ENSLOCG00000007414 I 0.770
ENSLOCG00000007856 Lepisosteus oculatus ENSLOCG00000007856 I 0.757
SP3 Meleagris gallopavo ENSMGAG00000009845 I 0.770
SP3 Microcebus murinus ENSMICG00000014796 I 0.770
SP3 Myotis lucifugus ENSMLUG00000006791 I 0.770
SP3 Macaca mulatta ENSMMUG00000021818 I 0.770
SP3 Monodelphis domestica ENSMODG00000009184 I 0.770
ENSMPUG00000013903 Mustela putorius furo ENSMPUG00000013903 I 0.770
ENSNLEG00000005812 Nomascus leucogenys ENSNLEG00000005812 I 0.763
SP3 Ornithorhynchus anatinus ENSOANG00000008599 I 0.770
ENSOARG00000000469 Ovis aries ENSOARG00000000469 I 0.770
SP3 Oryctolagus cuniculus ENSOCUG00000026678 I 0.770
SP3 Otolemur garnettii ENSOGAG00000026846 I 0.770
ENSONIG00000001262 Oreochromis niloticus ENSONIG00000001262 I 0.770
ENSONIG00000008666 Oreochromis niloticus ENSONIG00000008666 I 0.770
ENSONIG00000008768 Oreochromis niloticus ENSONIG00000008768 I 0.757
SP3 Ochotona princeps ENSOPRG00000005517 I 0.770
sp3b Oryzias latipes ENSORLG00000013706 I 0.770
sp5a Oryzias latipes ENSORLG00000017252 I 0.757
sp3a Oryzias latipes ENSORLG00000017474 I 0.770
ENSPANG00000005418 Papio anubis ENSPANG00000005418 I 0.770
SP3 Procavia capensis ENSPCAG00000002179 I 0.770
ENSPFOG00000011175 Poecilia formosa ENSPFOG00000011175 I 0.757
ENSPFOG00000013312 Poecilia formosa ENSPFOG00000013312 I 0.770
ENSPFOG00000016261 Poecilia formosa ENSPFOG00000016261 I 0.770
ENSPPYG00000012941 Pongo abelii ENSPPYG00000012941 I 0.770
ENSPSIG00000017208 Pelodiscus sinensis ENSPSIG00000017208 I 0.770
SP3 Pan troglodytes ENSPTRG00000012647 I 0.770
SP3 Pteropus vampyrus ENSPVAG00000000981 I 0.770
Sp3 Rattus norvegicus ENSRNOG00000060479 I 0.770
SP3 Sorex araneus ENSSARG00000011358 I 0.770
ENSSHAG00000013923 Sarcophilus harrisii ENSSHAG00000013923 I 0.770
SP3 Sus scrofa ENSSSCG00000015962 I 0.770
ENSSSCG00000026327 Sus scrofa ENSSSCG00000026327 I 0.770
ENSSTOG00000023955 Ictidomys tridecemlineatus ENSSTOG00000023955 I 0.770
SP3 Tupaia belangeri ENSTBEG00000011156 I 0.770
SP3 Taeniopygia guttata ENSTGUG00000008690 I 0.770
sp5a Tetraodon nigroviridis ENSTNIG00000016928 I 0.757
sp3a Tetraodon nigroviridis ENSTNIG00000016947 I 0.770
sp3b Tetraodon nigroviridis ENSTNIG00000017208 I 0.770
sp3b Takifugu rubripes ENSTRUG00000015246 I 0.770
sp3a Takifugu rubripes ENSTRUG00000017623 I 0.770
sp5a Takifugu rubripes ENSTRUG00000017816 I 0.757
ENSTSYG00000008651 Tarsius syrichta ENSTSYG00000008651 I 0.770
SP3 Tursiops truncatus ENSTTRG00000016998 I 0.770
ENSXMAG00000004924 Xiphophorus maculatus ENSXMAG00000004924 I 0.757
ENSXMAG00000005322 Xiphophorus maculatus ENSXMAG00000005322 I 0.770
ENSXMAG00000009872 Xiphophorus maculatus ENSXMAG00000009872 I 0.770
NV20053 Nasonia vitripennis NV20053 I 0.759
SPU_009831 Strongylocentrotus purpuratus SPU_009831 I 0.780
SPU_009832 Strongylocentrotus purpuratus SPU_009832 I 0.780
Aan_R000276 Calypte anna Aan_R000276 I 0.770
Afo_R006914 Aptenodytes forsteri Afo_R006914 I 0.770
Alligator_sinensis_CCG008293.1 Alligator sinensis Alligator_sinensis_CCG008293.1 I 0.757
Alligator_sinensis_CCG010641.1 Alligator sinensis Alligator_sinensis_CCG010641.1 I 0.770
Brh_R011836 Buceros rhinoceros Brh_R011836 I 0.770
ENSBTAP00000000201-D1 Bos grunniens ENSBTAP00000000201-D1 I 0.770
ENSP00000310301 Macaca fascicularis ENSP00000310301 I 0.770
Gfo_R001364 Geospiza fortis Gfo_R001364 I 0.770
Myotis_brandtii_Sp3_10034975 Myotis brandtii Myotis_brandtii_Sp3_10034975 I 0.770
Pvit_02955 Pogona vitticeps Pvit_02955 I 0.770
Tal_R005247 Tyto alba Tal_R005247 I 0.770
Ocbimv22017043m.g Octopus bimaculoides Ocbimv22017043m.g I 0.757
sp5 Xenopus tropicalis XB-GENE-1217606 I 0.757
sp5.S Xenopus laevis XB-GENE-1217613 I 0.755
sp5.L Xenopus laevis XB-GENE-6254266 I 0.757
sp3 Xenopus tropicalis XB-GENE-977158 I 0.770
sp3.S Xenopus laevis XB-GENE-977162 I 0.770
BXY_0564300 Bursaphelenchus xylophilus BXY_0564300 I 0.760
SBAD_0000755901 Soboliphyme baturini SBAD_0000755901 I 0.767