PTRK_0000952000 (Parastrongyloides trichosuri)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PTRK_0000952000 T155744_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
klu
M03680_2.00 		Drosophila melanogaster
HCCRCCCACGCAH
DTGCGTGGGYGGD		 SELEX
Nitta et al.(2015)
klu_1 		0.760 0.772
klu
M03681_2.00 		Drosophila melanogaster
YMCGCCCMCGCAH
DTGCGKGGGCGKR		 SELEX
Nitta et al.(2015)
klu_2 		0.760 0.772
klu
M06114_2.00 		Drosophila melanogaster
MCACCCMCRCA
TGYGKGGGTGK		 B1H
Zhu et al.(2011)
klu_SANGER_10_FBgn0013469 		0.760 0.772
klu
M06115_2.00 		Drosophila melanogaster
NNNNMCACCCMCRCN
NGYGKGGGTGKNNNN		 B1H
Zhu et al.(2011)
klu_SOLEXA_5_FBgn0013469 		0.760 0.772
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PTRK_0000952000.1 C2H2 ZF 605 628
PTRK_0000952000.1 C2H2 ZF 644 666
PTRK_0000952000.1 C2H2 ZF 672 694
PTRK_0000952000.1 C2H2 ZF 700 722

Links

Other C2H2 ZF family TFs
Other Parastrongyloides trichosuri TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPSIG00000005394 Pelodiscus sinensis ENSPSIG00000005394 N
prdm2 Xenopus tropicalis XB-GENE-5957530 N
Ogr07692 Ophisaurus gracilis Ogr07692 N
Myotis_brandtii_PRDM2_10022047 Myotis brandtii Myotis_brandtii_PRDM2_10022047 N
Gfo_R002647 Geospiza fortis Gfo_R002647 N
ENSP00000235372-D1 Bos grunniens ENSP00000235372-D1 N
Cmyd_10020922 Chelonia mydas Cmyd_10020922 N
Brh_R004016 Buceros rhinoceros Brh_R004016 N
Alligator_sinensis_CCG015430.1 Alligator sinensis Alligator_sinensis_CCG015430.1 N
Afo_R013021 Aptenodytes forsteri Afo_R013021 N
Aan_R001472 Calypte anna Aan_R001472 N
PRDM2 Tursiops truncatus ENSTTRG00000005029 N
PRDM2 Anolis carolinensis ENSACAG00000010749 N
PRDM2 Ornithorhynchus anatinus ENSOANG00000009908 N
ENSMPUG00000016352 Mustela putorius furo ENSMPUG00000016352 N
PRDM2 Myotis lucifugus ENSMLUG00000006969 N
PRDM2 Meleagris gallopavo ENSMGAG00000005888 N
ENSGALG00000004089 Gallus gallus ENSGALG00000004089 N
PRDM2 Erinaceus europaeus ENSEEUG00000014607 N
PRDM2 Equus caballus ENSECAG00000008911 N
ENSCAFG00000016361 Canis familiaris ENSCAFG00000016361 N
PRDM2 Bos taurus ENSBTAG00000020552 N
ENSAPLG00000014764 Anas platyrhynchos ENSAPLG00000014764 N
ENSAMEG00000006714 Ailuropoda melanoleuca ENSAMEG00000006714 N