PXEA_0003135501 (Protopolystoma xenopodis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 PXEA_0003135501 T155854_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gl
M03671_2.00 		Drosophila melanogaster
RTTACCATACAAGTGCAV
BTGCACTTGTATGGTAAY		 SELEX
Nitta et al.(2015)
gl_1 		0.774 0.798
gl
M06078_2.00 		Drosophila melanogaster
DAYNCWTBAAAT
ATTTVAWGNRTH		 B1H
Zhu et al.(2011)
gl_FlyReg_FBgn0004618 		0.774 0.798
gl
M06079_2.00 		Drosophila melanogaster
TTRTABGGYTTC
GAARCCVTAYAA		 B1H
Zhu et al.(2011)
gl_SANGER_5_FBgn0004618 		0.774 0.798
gl
M06080_2.00 		Drosophila melanogaster
NNBDWNTADGGCTTC
GAAGCCHTANWHVNN		 B1H
Zhu et al.(2011)
gl_SOLEXA_5_FBgn0004618 		0.774 0.798
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PXEA_0003135501-mRNA-1 C2H2 ZF 452 473
PXEA_0003135501-mRNA-1 C2H2 ZF 479 501
PXEA_0003135501-mRNA-1 C2H2 ZF 507 529
PXEA_0003135501-mRNA-1 C2H2 ZF 535 557
PXEA_0003135501-mRNA-1 C2H2 ZF 563 585

Links

Other C2H2 ZF family TFs
Other Protopolystoma xenopodis TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_26881 Aegilops tauschii F775_26881 N
GRMZM5G885700 Zea mays GRMZM5G885700 N
Si017660m.g Setaria italica Si017660m.g N
Pavir.Aa01761 Panicum virgatum Pavir.Aa01761 N
Pavir.Ab01903 Panicum virgatum Pavir.Ab01903 N