SMRZ_0000904801 (Schistosoma margrebowiei)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SMRZ_0000904801 T156278_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.780 0.858
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.780 0.858
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.780 0.858
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.780 0.858
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.763 0.805
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.763 0.805
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.763 0.805
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.763 0.805
CG12605
M03691_2.00 		Drosophila melanogaster
RHGCAACAGGTGN
NCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
CG12605_1 		0.761 0.832
CG12605
M06139_2.00 		Drosophila melanogaster
CACCTGTKG
CMACAGGTG		 B1H
Zhu et al.(2011)
CG12605_SANGER_10_FBgn0035481 		0.761 0.832
CG12605
M06140_2.00 		Drosophila melanogaster
MCACCTGTKGVNN
NNBCMACAGGTGK		 B1H
Zhu et al.(2011)
CG12605_SOLEXA_5_FBgn0035481 		0.761 0.832
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.757 0.796
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.757 0.796
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.757 0.796
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMRZ_0000904801-mRNA-1 C2H2 ZF 188 210
SMRZ_0000904801-mRNA-1 C2H2 ZF 220 241
SMRZ_0000904801-mRNA-1 C2H2 ZF 245 267
SMRZ_0000904801-mRNA-1 C2H2 ZF 273 295
SMRZ_0000904801-mRNA-1 C2H2 ZF 301 322

Links

Other C2H2 ZF family TFs
Other Schistosoma margrebowiei TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PTRK_0001321400 Parastrongyloides trichosuri PTRK_0001321400 N
L596_g8102 Steinernema carpocapsae L596_g8102 N
L889_g21858 Steinernema feltiae L889_g21858 N
L892_g27212 Steinernema scapterisci L892_g27212 N
L893_g27569 Steinernema glaseri L893_g27569 N
L898_g616 Steinernema monticolum L898_g616 N
nAv.1.0.1.g00516 Acanthocheilonema viteae nAv.1.0.1.g00516 N
nDi.2.2.2.g01644 Dirofilaria immitis nDi.2.2.2.g01644 N
NECAME_02209 Necator americanus NECAME_02209 N
PTRK_0000278100 Parastrongyloides trichosuri PTRK_0000278100 N
HCOI01581600 Haemonchus contortus HCOI01581600 N
RSKR_0000919500 Rhabditophanes kr3021 RSKR_0000919500 N
SBAD_0000496401 Soboliphyme baturini SBAD_0000496401 N
SPAL_0001235900 Strongyloides papillosus SPAL_0001235900 N
SPAL_0001311500 Strongyloides papillosus SPAL_0001311500 N
SSTP_0000280500 Strongyloides stercoralis SSTP_0000280500 N
SSTP_0000575300 Strongyloides stercoralis SSTP_0000575300 N
SVE_0150100 Strongyloides venezuelensis SVE_0150100 N
SVE_0362500 Strongyloides venezuelensis SVE_0362500 N
ACOC_0000735101 Angiostrongylus costaricensis ACOC_0000735101 N
Bm4516 Brugia malayi Bm4516 N
CBG12652 Caenorhabditis briggsae CBG12652 N
CBN08911 Caenorhabditis brenneri CBN08911 N
CBN31474 Caenorhabditis brenneri CBN31474 N
CJA17455 Caenorhabditis japonica CJA17455 N
CRE24738 Caenorhabditis remanei CRE24738 N
LOAG_10644 Loa loa LOAG_10644 N
let-607 Caenorhabditis elegans WBGene00002783 N
WUBG_03758 Wuchereria bancrofti WUBG_03758 N
ANCCEY_08318 Ancylostoma ceylanicum ANCCEY_08318 N
ASU_12421 Ascaris suum ASU_12421 N
BTMF_0000196601 Brugia timori BTMF_0000196601 N
BXY_0943600 Bursaphelenchus xylophilus BXY_0943600 N
DME_0000611701 Dracunculus medinensis DME_0000611701 N
EEL_0000168701 Elaeophora elaphi EEL_0000168701 N
GPLIN_001183200 Globodera pallida GPLIN_001183200 N
GPUH_0001467201 Gongylonema pulchrum GPUH_0001467201 N