SMUV_0000843501 (Syphacia muris)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SMUV_0000843501 T156445_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SCRT1
M02929_2.00 		Homo sapiens
RHKCAACAGGTGKNH
DNMCACCTGTTGMDY		 SELEX
Jolma et al.(2013)
SCRT1_1 		0.763 0.781
SCRT1
M04655_2.00 		Homo sapiens
NKCAACAGGTD
HACCTGTTGMN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_HT-SELEX 		0.763 0.781
SCRT1
M08397_2.00 		Homo sapiens
RWKCAACAGGTG
CACCTGTTGMWY		 ChIP-seq
Schmitges et al.(2016)
Q9BWW7_1-4.RCADE 		0.763 0.781
SCRT1
M04656_2.00 		Homo sapiens
NGCRACAGGTD
HACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT1_eDBD_Methyl-HT-SELEX 		0.763 0.781
scrt
M03673_2.00 		Drosophila melanogaster
RHGCAACAGGTGK
MCACCTGTTGCDY		 SELEX
Nitta et al.(2015)
scrt_1 		0.761 0.772
scrt
M06085_2.00 		Drosophila melanogaster
MCCACCTGTTG
CAACAGGTGGK		 B1H
Zhu et al.(2011)
scrt_SANGER_2.5_FBgn0004880 		0.761 0.772
scrt
M06086_2.00 		Drosophila melanogaster
DNKCAACAGGTGK
MCACCTGTTGMNH		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_1_FBgn0004880 		0.761 0.772
scrt
M06087_2.00 		Drosophila melanogaster
VMCACCTGTTGMN
NKCAACAGGTGKB		 B1H
Zhu et al.(2011)
scrt_SOLEXA_2.5_2_FBgn0004880 		0.761 0.772
SCRT2
M02925_2.00 		Homo sapiens
RHGCAACAGGTGB
VCACCTGTTGCDY		 SELEX
Jolma et al.(2013)
SCRT2_1 		0.760 0.781
SCRT2
M04643_2.00 		Homo sapiens
NGCAACAGGTD
HACCTGTTGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_HT-SELEX 		0.760 0.781
SCRT2
M04644_2.00 		Homo sapiens
NGCRACAGGTG
CACCTGTYGCN		 SELEX
Yin et al.(2017)
SCRT2_eDBD_Methyl-HT-SELEX 		0.760 0.781
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SMUV_0000843501-mRNA-1 C2H2 ZF 63 85
SMUV_0000843501-mRNA-1 C2H2 ZF 94 116
SMUV_0000843501-mRNA-1 C2H2 ZF 120 142
SMUV_0000843501-mRNA-1 C2H2 ZF 148 170
SMUV_0000843501-mRNA-1 C2H2 ZF 176 197

Links

Other C2H2 ZF family TFs
Other Syphacia muris TFs

178 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZFP30 Otolemur garnettii ENSOGAG00000013495 N
Myotis_brandtii_ZFP30_10005467 Myotis brandtii Myotis_brandtii_ZFP30_10005467 N
ENSMMUP00000002578 Macaca fascicularis ENSMMUP00000002578 N
ZFP30 Vicugna pacos ENSVPAG00000010720 N
ENSTSYG00000010884 Tarsius syrichta ENSTSYG00000010884 N
ENSSTOG00000005694 Ictidomys tridecemlineatus ENSSTOG00000005694 N
ZFP30 Sus scrofa ENSSSCG00000029408 N
ZFP30 Sorex araneus ENSSARG00000000413 N
Zfp30 Rattus norvegicus ENSRNOG00000055519 N
ZFP30 Pteropus vampyrus ENSPVAG00000006214 N
ZFP30 Pan troglodytes ENSPTRG00000010914 N
ENSPPYG00000009918 Pongo abelii ENSPPYG00000009918 N
ENSPANG00000019660 Papio anubis ENSPANG00000019660 N
ZFP30 Callithrix jacchus ENSCJAG00000009479 N
ZFP30 Oryctolagus cuniculus ENSOCUG00000010157 N
ENSNLEG00000016977 Nomascus leucogenys ENSNLEG00000016977 N
Zfp30 Mus musculus ENSMUSG00000047473 N
ENSMMUG00000001933 Macaca mulatta ENSMMUG00000001933 N
ZFP30 Myotis lucifugus ENSMLUG00000012181 N
ZFP30 Loxodonta africana ENSLAFG00000004782 N
ZFP30 Gorilla gorilla ENSGGOG00000016654 N
ZFP30 Homo sapiens ENSG00000120784 N
ZFP30 Equus caballus ENSECAG00000017215 N
ZFP30 Dasypus novemcinctus ENSDNOG00000032824 N
ENSCSAG00000004151 Chlorocebus sabaeus ENSCSAG00000004151 N
ZFP30 Cavia porcellus ENSCPOG00000007951 N