SSLN_0000320501 (Schistocephalus solidus)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 SSLN_0000320501 T157042_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sp1
M00765_2.00 		Mus musculus
NMCGCCCMY
RKGGGCGKN		 PBM
Weirauch et al.(2013)
pTH0978 		0.769 0.783
SP1
M02921_2.00 		Homo sapiens
RCCMCDCCCMH
DKGGGHGKGGY		 SELEX
Jolma et al.(2013)
SP1_1 		0.769 0.783
SP1
M04605_2.00 		Homo sapiens
NWRRCCACGCCCMCH
DGKGGGCGTGGYYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_HT-SELEX 		0.769 0.783
SP1
M08096_2.00 		Homo sapiens
BYCCCKCCCCY
RGGGGMGGGRV		 ChIP-seq
Mathelier et al.(2014)
MA0079.3 		0.769 0.783
SP1
M08363_2.00 		Homo sapiens
CCCHNBCYCCDCCCY
RGGGHGGRGVNDGGG		 ChIP-seq
Schmitges et al.(2016)
P08047.MEME 		0.769 0.783
SP1
M08938_2.00 		Homo sapiens
BCSSSBCCHVGCCCCGCCCCYN
NRGGGGCGGGGCBDGGVSSSGV		 Misc
Kulakovskiy et al.(2013)
SP1_HUMAN.H11MO.0.A 		0.769 0.783
Sp1
M08963_2.00 		Mus musculus
CCCBKCYCCKCCCCCNBCYCSBSC
GSVSGRGVNGGGGGMGGRGMVGGG		 Misc
Kulakovskiy et al.(2013)
SP1_MOUSE.H11MO.0.A 		0.769 0.783
SP1
M10294_2.00 		Homo sapiens
DSCMHGCCYH
DRGGCDKGSH		 Transfac
Matys et al.(2006)
V$SP1_01 		0.769 0.783
SP1
M10295_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_02 		0.769 0.783
SP1
M10296_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_07 		0.769 0.783
SP1
M10297_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_08 		0.769 0.783
SP1
M10298_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q2_02 		0.769 0.783
SP1
M10299_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SP1_Q3 		0.769 0.783
SP1
M10300_2.00 		Homo sapiens
VVCCCCGCCCMBN
NVKGGGCGGGGBB		 Transfac
Matys et al.(2006)
V$SP1_Q6 		0.769 0.783
SP1
M04606_2.00 		Homo sapiens
NWRGCCMCGCCCMYH
DRKGGGCGKGGCYWN		 SELEX
Yin et al.(2017)
SP1_eDBD_Methyl-HT-SELEX 		0.769 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SSLN_0000320501-mRNA-1 C2H2 ZF 381 403
SSLN_0000320501-mRNA-1 C2H2 ZF 409 433
SSLN_0000320501-mRNA-1 C2H2 ZF 439 461

Links

Other C2H2 ZF family TFs
Other Schistocephalus solidus TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo4g173170 Brassica oleracea Bo4g173170 N
Bostr.7867s0394 Boechera stricta Bostr.7867s0394 N
Bostr.13404s0068 Boechera stricta Bostr.13404s0068 N
Bostr.12302s0059 Boechera stricta Bostr.12302s0059 N
Bostr.0597s0093 Boechera stricta Bostr.0597s0093 N
Bo9g181220 Brassica oleracea Bo9g181220 N
Bo8g066500 Brassica oleracea Bo8g066500 N
Bo7g093290 Brassica oleracea Bo7g093290 N
Bo7g065570 Brassica oleracea Bo7g065570 N
Bo7g016140 Brassica oleracea Bo7g016140 N
Bo6g087610 Brassica oleracea Bo6g087610 N
Bo5g118900 Brassica oleracea Bo5g118900 N
Bo5g041280 Brassica oleracea Bo5g041280 N
Bo01093s010 Brassica oleracea Bo01093s010 N
Bo4g161430 Brassica oleracea Bo4g161430 N
Bo4g096780 Brassica oleracea Bo4g096780 N
Bo4g052050 Brassica oleracea Bo4g052050 N
Bo4g009340 Brassica oleracea Bo4g009340 N
Bo3g107290 Brassica oleracea Bo3g107290 N
Bo2g050430 Brassica oleracea Bo2g050430 N
Bo1g101740 Brassica oleracea Bo1g101740 N
Bo09855s010 Brassica oleracea Bo09855s010 N
Bo08089s010 Brassica oleracea Bo08089s010 N
Bo01294s010 Brassica oleracea Bo01294s010 N
Bo01167s020 Brassica oleracea Bo01167s020 N