GPLIN_000814800 (Globodera pallida)
C2HC ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01530 (zf-C2HC) IPR002515 GPLIN_000814800 T159630_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000814800 C2HC ZF 115 142

Links

Other C2HC ZF family TFs
Other Globodera pallida TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000263900 Malus domestica MDP0000263900 I
Traes_3AL_3160E1F30 Triticum aestivum Traes_3AL_3160E1F30 I
TRAES3BF090100100CFD_g Triticum aestivum TRAES3BF090100100CFD_g I
MLOC_19031 Hordeum vulgare MLOC_19031 I
TRIUR3_34281 Triticum urartu TRIUR3_34281 I
cassava10020.m1 Manihot esculenta cassava10020.m1 N
POPTR_0003s20860 Populus trichocarpa POPTR_0003s20860 N
Sb01g012870 Sorghum bicolor Sb01g012870 N
Si038001m.g Setaria italica Si038001m.g N
Si038955m.g Setaria italica Si038955m.g N
Traes_4AL_234E1CDF6 Triticum aestivum Traes_4AL_234E1CDF6 N
Traes_4DS_CFC487CE5 Triticum aestivum Traes_4DS_CFC487CE5 N
POPTR_0001s03970 Populus trichocarpa POPTR_0001s03970 N
Ciclev10017173m.g Citrus clementina Ciclev10017173m.g N
Eucgr.J01756 Eucalyptus grandis Eucgr.J01756 N
gene01596-v1.0-hybrid Fragaria vesca gene01596-v1.0-hybrid N
orange1.1g032690m.g Citrus sinensis orange1.1g032690m.g N
Pavir.J22786 Panicum virgatum Pavir.J22786 N
SapurV1A.0081s0610 Salix purpurea SapurV1A.0081s0610 N
OBART03G28190 Oryza barthii OBART03G28190 N
BGIOSGA010118 Oryza indica BGIOSGA010118 N
BRADI1G13207 Brachypodium distachyon BRADI1G13207 N
F775_42487 Aegilops tauschii F775_42487 N
GRMZM2G149219 Zea mays GRMZM2G149219 N
GSMUA_Achr3G30880_001 Musa acuminata GSMUA_Achr3G30880_001 N
LPERR03G23380 Leersia perrieri LPERR03G23380 N
MLOC_16746 Hordeum vulgare MLOC_16746 N
OB03G35830 Oryza brachyantha OB03G35830 N
AMTR_s00004p00067720 Amborella trichopoda AMTR_s00004p00067720 N
OGLUM03G28820 Oryza glumaepatula OGLUM03G28820 N
OMERI03G24810 Oryza meridionalis OMERI03G24810 N
ONIVA03G29220 Oryza nivara ONIVA03G29220 N
OPUNC03G25700 Oryza punctata OPUNC03G25700 N
ORGLA03G0260500 Oryza glaberrima ORGLA03G0260500 N
ORUFI03G29320 Oryza rufipogon ORUFI03G29320 N
OS03G0657400 Oryza sativa OS03G0657400 N