Pavir.Ba00442 (Panicum virgatum)
CBF/NF-Y

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02045 (CBFB_NFYA) IPR001289 Pavir.Ba00442 T160731_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NFYA
M08104_2.00 		Homo sapiens
NSTGATTGGYB
VRCCAATCASN		 ChIP-seq
Mathelier et al.(2014)
MA0060.3 		0.750 0.750
NFYA
M09018_2.00 		Homo sapiens
YKBYSATTGGYYRV
BYRRCCAATSRVMR		 Misc
Kulakovskiy et al.(2013)
NFYA_HUMAN.H11MO.0.A 		0.750 0.750
Nfya
M09019_2.00 		Mus musculus
YKBYSATTGGYYRV
BYRRCCAATSRVMR		 Misc
Kulakovskiy et al.(2013)
NFYA_MOUSE.H11MO.0.A 		0.750 0.750
NFYA
M10403_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFYA_02 		0.750 0.750
NFYA
M10404_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NFYA_Q5 		0.750 0.750
NFYA
M10405_2.00 		Homo sapiens
NYTGATTGGYTAVH
DBTARCCAATCARN		 Transfac
Matys et al.(2006)
V$NFY_C 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ba00442.1.p CBF/NF-Y 154 209
Pavir.Ba00442.2.p CBF/NF-Y 154 209

Links

Other CBF/NF-Y family TFs
Other Panicum virgatum TFs

704 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Fev Mus musculus ENSMUSG00000055197 D
ETV6 Homo sapiens ENSG00000139083 D
ELF1 Homo sapiens ENSG00000120690 D
ERF Homo sapiens ENSG00000105722 D
DILT_0000398501 Diphyllobothrium latum DILT_0000398501 I
L596_g12359 Steinernema carpocapsae L596_g12359 I
DICVIV_12912 Dictyocaulus viviparus DICVIV_12912 I
DICVIV_06455 Dictyocaulus viviparus DICVIV_06455 I
CGOC_0000700501 Cylicostephanus goldi CGOC_0000700501 I
CGOC_0000212501 Cylicostephanus goldi CGOC_0000212501 I
BTMF_0000163201 Brugia timori BTMF_0000163201 I
ASIM_0001461601 Anisakis simplex ASIM_0001461601 I
ASIM_0000264801 Anisakis simplex ASIM_0000264801 I
ANCDUO_25190 Ancylostoma duodenale ANCDUO_25190 I
ANCDUO_20982 Ancylostoma duodenale ANCDUO_20982 I
ANCDUO_03053 Ancylostoma duodenale ANCDUO_03053 I
ANCCEY_14629 Ancylostoma ceylanicum ANCCEY_14629 I
ANCCEY_02814 Ancylostoma ceylanicum ANCCEY_02814 I
ANCCAN_17433 Ancylostoma caninum ANCCAN_17433 I
PPAI005463 Phlebotomus papatasi PPAI005463 I
BGLB012440 Biomphalaria glabrata BGLB012440 I
AMIN011055 Anopheles minimus AMIN011055 I
AMAM023294 Anopheles maculatus AMAM023294 I
AMAM002408 Anopheles maculatus AMAM002408 I
AARA005669 Anopheles arabiensis AARA005669 I
SMU15031575 Schmidtea mediterranea SMU15031575 I
Alligator_sinensis_CCG005858.1 Alligator sinensis Alligator_sinensis_CCG005858.1 I
Alligator_sinensis_CCG001127.1 Alligator sinensis Alligator_sinensis_CCG001127.1 I
SPER_0001543201 Spirometra erinaceieuropaei SPER_0001543201 I
TELCIR_21777 Teladorsagia circumcincta TELCIR_21777 I
TELCIR_20449 Teladorsagia circumcincta TELCIR_20449 I
TELCIR_12432 Teladorsagia circumcincta TELCIR_12432 I
TCNE_0001894301 Toxocara canis TCNE_0001894301 I
TCLT_0000333001 Thelazia callipaeda TCLT_0000333001 I
SROB_0001733701 Schistosoma rodhaini SROB_0001733701 I
SPER_0002447201 Spirometra erinaceieuropaei SPER_0002447201 I
SPER_0002333601 Spirometra erinaceieuropaei SPER_0002333601 I
SPER_0002289501 Spirometra erinaceieuropaei SPER_0002289501 I
SPER_0002229601 Spirometra erinaceieuropaei SPER_0002229601 I
SPER_0001929301 Spirometra erinaceieuropaei SPER_0001929301 I
ECPE_0000832401 Echinostoma caproni ECPE_0000832401 I
SMUV_0000898501 Syphacia muris SMUV_0000898501 I
SCUD_0001741701 Schistosoma curassoni SCUD_0001741701 I
SCUD_0001589201 Schistosoma curassoni SCUD_0001589201 I
PXEA_0003657701 Protopolystoma xenopodis PXEA_0003657701 I
OESDEN_16524 Oesophagostomum dentatum OESDEN_16524 I
OESDEN_01353 Oesophagostomum dentatum OESDEN_01353 I
L898_g6107 Steinernema monticolum L898_g6107 I
L889_g29916 Steinernema feltiae L889_g29916 I
L596_g92 Steinernema carpocapsae L596_g92 I
NEMVEDRAFT_v1g201692 Nematostella vectensis NEMVEDRAFT_v1g201692 I
Hba_08310 Heterorhabditis bacteriophora Hba_08310 I
ETV5 Erinaceus europaeus ENSEEUG00000003754 I
ENSPSIG00000014193 Pelodiscus sinensis ENSPSIG00000014193 I
ENSPFOG00000008185 Poecilia formosa ENSPFOG00000008185 I
ELF1 Procavia capensis ENSPCAG00000013981 I
ETV5 Procavia capensis ENSPCAG00000011636 I
ENSOCUG00000021953 Oryctolagus cuniculus ENSOCUG00000021953 I
ENSMEUG00000006389 Macropus eugenii ENSMEUG00000006389 I
ENSLACG00000006078 Latimeria chalumnae ENSLACG00000006078 I
ENSGMOG00000005395 Gadus morhua ENSGMOG00000005395 I
ENSGGOG00000022492 Gorilla gorilla ENSGGOG00000022492 I
etv1 Gasterosteus aculeatus ENSGACG00000012802 I
ETS2 Erinaceus europaeus ENSEEUG00000015949 I
ELF2 Sus scrofa ENSSSCG00000029920 I
ENSDORG00000015174 Dipodomys ordii ENSDORG00000015174 I
Elf4 Dipodomys ordii ENSDORG00000014956 I
ENSDNOG00000034553 Dasypus novemcinctus ENSDNOG00000034553 I
ELF1 Callithrix jacchus ENSCJAG00000017782 I
ERF Callithrix jacchus ENSCJAG00000012822 I
ENSCHOG00000011634 Choloepus hoffmanni ENSCHOG00000011634 I
CGI_10011699 Crassostrea gigas CGI_10011699 I
CGI_10011697 Crassostrea gigas CGI_10011697 I
CGI_10000136 Crassostrea gigas CGI_10000136 I
Bm5683 Brugia malayi Bm5683 I
BGIBMGA003939 Bombyx mori BGIBMGA003939 I
ENSTRUG00000006311 Takifugu rubripes ENSTRUG00000006311 I
SINV18588 Solenopsis invicta SINV18588 I
BGIBMGA001714 Bombyx mori BGIBMGA001714 I
ML46087a Mnemiopsis leidyi ML46087a I
LOAG_09309 Loa loa LOAG_09309 I
KGM_04984 Danaus plexippus KGM_04984 I
ENSXMAG00000018944 Xiphophorus maculatus ENSXMAG00000018944 I
ETV5 Vicugna pacos ENSVPAG00000012018 I
ENSVPAG00000006558 Vicugna pacos ENSVPAG00000006558 I
ELF2 Vicugna pacos ENSVPAG00000003668 I
ETS2 Vicugna pacos ENSVPAG00000002062 I
ENSTRUG00000007244 Takifugu rubripes ENSTRUG00000007244 I
YQE_05461 Dendroctonus ponderosae YQE_05461 I
ENSTRUG00000004604 Takifugu rubripes ENSTRUG00000004604 I
ENSTNIG00000006987 Tetraodon nigroviridis ENSTNIG00000006987 I
ENSTGUG00000006059 Taeniopygia guttata ENSTGUG00000006059 I
ENSTBEG00000008569 Tupaia belangeri ENSTBEG00000008569 I
ETV6 Tupaia belangeri ENSTBEG00000004004 I
GABPA Tupaia belangeri ENSTBEG00000002362 I
ENSTBEG00000001919 Tupaia belangeri ENSTBEG00000001919 I
ETV7 Tupaia belangeri ENSTBEG00000000299 I
ENSSTOG00000010509 Ictidomys tridecemlineatus ENSSTOG00000010509 I
SPDEF Tupaia belangeri ENSTBEG00000015013 N