LIN28B (Erinaceus europaeus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSEEUG00000003632 T164535_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.970 0.970
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.970 0.970
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSEEUP00000003294 CSD 29 101

Links

Other CSD family TFs
Other Erinaceus europaeus TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OMERI01G24610 Oryza meridionalis OMERI01G24610 N
Pavir.J11985 Panicum virgatum Pavir.J11985 N
Pavir.J09720 Panicum virgatum Pavir.J09720 N
TRAES3BF178300020CFD_g Triticum aestivum TRAES3BF178300020CFD_g N
Sb03g029470 Sorghum bicolor Sb03g029470 N
OS01G0646300 Oryza sativa OS01G0646300 N
ORUFI01G27440 Oryza rufipogon ORUFI01G27440 N
ORGLA01G0197900 Oryza glaberrima ORGLA01G0197900 N
OPUNC01G24550 Oryza punctata OPUNC01G24550 N
ONIVA01G27720 Oryza nivara ONIVA01G27720 N
BGIOSGA001121 Oryza indica BGIOSGA001121 N
OLONG_004760 Oryza longistaminata OLONG_004760 N
OGLUM01G28380 Oryza glumaepatula OGLUM01G28380 N
OBART01G24520 Oryza barthii OBART01G24520 N
OB01G33730 Oryza brachyantha OB01G33730 N
MLOC_73617 Hordeum vulgare MLOC_73617 N
LPERR01G20990 Leersia perrieri LPERR01G20990 N
GRMZM5G826526 Zea mays GRMZM5G826526 N
GRMZM2G001426 Zea mays GRMZM2G001426 N
BRADI2G45117 Brachypodium distachyon BRADI2G45117 N