ybx1 (Gasterosteus aculeatus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSGACG00000006447 T164570_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		1.000 1.000
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		1.000 1.000
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		1.000 1.000
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		1.000 1.000
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.818 0.818
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000008523 CSD 39 108

Links

Other CSD family TFs
Other Gasterosteus aculeatus TFs

411 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPVAG00000015636 Pteropus vampyrus ENSPVAG00000015636 N
ENSNLEG00000014652 Nomascus leucogenys ENSNLEG00000014652 N
ENSOARG00000016792 Ovis aries ENSOARG00000016792 N
ENSOCUG00000024037 Oryctolagus cuniculus ENSOCUG00000024037 N
ENSOGAG00000005719 Otolemur garnettii ENSOGAG00000005719 N
ENSOPRG00000013892 Ochotona princeps ENSOPRG00000013892 N
ENSPANG00000023728 Papio anubis ENSPANG00000023728 N
ENSPPYG00000029913 Pongo abelii ENSPPYG00000029913 N
ZNF286A Pan troglodytes ENSPTRG00000008803 N
Zfp286 Mus musculus ENSMUSG00000047342 N
Zfp286a Rattus norvegicus ENSRNOG00000003218 N
ENSSTOG00000024669 Ictidomys tridecemlineatus ENSSTOG00000024669 N
ENSTSYG00000002897 Tarsius syrichta ENSTSYG00000002897 N
ENSTTRG00000017194 Tursiops truncatus ENSTTRG00000017194 N
ENSVPAG00000012293 Vicugna pacos ENSVPAG00000012293 N
ENSBTAP00000001247-D1 Bos grunniens ENSBTAP00000001247-D1 N
ENSMMUP00000003150 Macaca fascicularis ENSMMUP00000003150 N
ENSETEG00000005043 Echinops telfairi ENSETEG00000005043 N
ENSBTAG00000000943 Bos taurus ENSBTAG00000000943 N
ENSCAFG00000031764 Canis familiaris ENSCAFG00000031764 N
ENSCJAG00000004366 Callithrix jacchus ENSCJAG00000004366 N
ENSCPOG00000012429 Cavia porcellus ENSCPOG00000012429 N
ENSCSAG00000008839 Chlorocebus sabaeus ENSCSAG00000008839 N
ENSDNOG00000047188 Dasypus novemcinctus ENSDNOG00000047188 N
ENSDORG00000003193 Dipodomys ordii ENSDORG00000003193 N
ENSECAG00000002943 Equus caballus ENSECAG00000002943 N
ENSAMEG00000004806 Ailuropoda melanoleuca ENSAMEG00000004806 N
ENSFCAG00000029151 Felis catus ENSFCAG00000029151 N
ZNF286A Homo sapiens ENSG00000187607 N
ENSGGOG00000022789 Gorilla gorilla ENSGGOG00000022789 N
ENSLAFG00000016102 Loxodonta africana ENSLAFG00000016102 N
ENSMLUG00000015932 Myotis lucifugus ENSMLUG00000015932 N
ENSMMUG00000002354 Macaca mulatta ENSMMUG00000002354 N
ENSMPUG00000010104 Mustela putorius furo ENSMPUG00000010104 N