ENSLOCG00000016539 (Lepisosteus oculatus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSLOCG00000016539 T164609_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.864 0.864
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.864 0.864
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLOCP00000020425 CSD 31 103

Links

Other CSD family TFs
Other Lepisosteus oculatus TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava32082.m1 Manihot esculenta cassava32082.m1 N 0.000
estExt_fgenesh1_pg.C_50294 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_50294 N 0.000
Ciclev10007563m.g Citrus clementina Ciclev10007563m.g N 0.000
Carubv10016730m.g Capsella rubella Carubv10016730m.g N 0.000
Cagra.4079s0001 Capsella grandiflora Cagra.4079s0001 N 0.000
Bostr.0556s0671 Boechera stricta Bostr.0556s0671 N 0.000
Aquca_020_00580 Aquilegia coerulea Aquca_020_00580 N 0.000
Aquca_013_00919 Aquilegia coerulea Aquca_013_00919 N 0.000
mgf013854m Mimulus guttatus mgf013854m N 0.000
Cucsa.359860 Cucumis sativus Cucsa.359860 N 0.000
Cucsa.149260 Cucumis sativus Cucsa.149260 N 0.000
Cucsa.051610 Cucumis sativus Cucsa.051610 N 0.000
cassava33852.m1 Manihot esculenta cassava33852.m1 N 0.000
Eucgr.C00764 Eucalyptus grandis Eucgr.C00764 N 0.000
29739.m003683 Ricinus communis 29739.m003683 N 0.000
Pm013168 Prunus mume Pm013168 N 0.000
Cla012753 Citrullus lanatus Cla012753 N 0.000
Ca_18326 Cicer arietinum Ca_18326 N 0.000
Ca_16182 Cicer arietinum Ca_16182 N 0.000
VIT_11s0016g00370 Vitis vinifera VIT_11s0016g00370 N 0.000
VIT_09s0002g00430 Vitis vinifera VIT_09s0002g00430 N 0.000
TRIUR3_24005 Triticum urartu TRIUR3_24005 N 0.000
Traes_5DL_E48356A5C Triticum aestivum Traes_5DL_E48356A5C N 0.000
Traes_5BL_114179614 Triticum aestivum Traes_5BL_114179614 N 0.000
Traes_5AL_0CF3E9D4A Triticum aestivum Traes_5AL_0CF3E9D4A N 0.000
MDP0000310024 Malus domestica MDP0000310024 N 0.000
PDK_20s1668051g003 Phoenix dactylifera PDK_20s1668051g003 N 0.000
PDK_20s1329251g001 Phoenix dactylifera PDK_20s1329251g001 N 0.000
estExt_fgeneshCV_pg.C_50315 Chlorella vulgaris estExt_fgeneshCV_pg.C_50315 N 0.000
PK11738.1 Cannabis sativa PK11738.1 N 0.000
Thhalv10002415m.g Eutrema salsugineum Thhalv10002415m.g N 0.000
SapurV1A.0249s0150 Salix purpurea SapurV1A.0249s0150 N 0.000
SapurV1A.0121s0150 Salix purpurea SapurV1A.0121s0150 N 0.000
Pavir.J03302 Panicum virgatum Pavir.J03302 N 0.000
Pavir.Fb01510 Panicum virgatum Pavir.Fb01510 N 0.000
Pavir.Fa00815 Panicum virgatum Pavir.Fa00815 N 0.000
Pavir.Bb02255 Panicum virgatum Pavir.Bb02255 N 0.000
orange1.1g004566m.g Citrus sinensis orange1.1g004566m.g N 0.000
TCM_037452 Theobroma cacao TCM_037452 N 0.000
MDP0000244853 Malus domestica MDP0000244853 N 0.000
MDP0000233594 Malus domestica MDP0000233594 N 0.000
MDP0000214795 Malus domestica MDP0000214795 N 0.000
Lus10039924.g Linum usitatissimum Lus10039924.g N 0.000
Lus10027658.g Linum usitatissimum Lus10027658.g N 0.000
Gorai.010G095800 Gossypium raimondii Gorai.010G095800 N 0.000
Gorai.009G038600 Gossypium raimondii Gorai.009G038600 N 0.000
Gorai.001G018000 Gossypium raimondii Gorai.001G018000 N 0.000
gene05453-v1.0-hybrid Fragaria vesca gene05453-v1.0-hybrid N 0.000
evm.TU.supercontig_82.51 Carica papaya evm.TU.supercontig_82.51 N 0.000
Eucgr.I02158 Eucalyptus grandis Eucgr.I02158 N 0.000
GLYMA09G08690 Glycine max GLYMA09G08690 N 0.000
OB09G17930 Oryza brachyantha OB09G17930 N 0.000
MTR_8g022980 Medicago truncatula MTR_8g022980 N 0.000
MTR_2g044550 Medicago truncatula MTR_2g044550 N 0.000
MLOC_66426 Hordeum vulgare MLOC_66426 N 0.000
LPERR09G08040 Leersia perrieri LPERR09G08040 N 0.000
GSMUA_Achr3G05790_001 Musa acuminata GSMUA_Achr3G05790_001 N 0.000
GSMUA_Achr10G18680_001 Musa acuminata GSMUA_Achr10G18680_001 N 0.000
GRMZM5G866423 Zea mays GRMZM5G866423 N 0.000
GRMZM2G140156 Zea mays GRMZM2G140156 N 0.000
GRMZM2G138976 Zea mays GRMZM2G138976 N 0.000
GLYMA16G01560 Glycine max GLYMA16G01560 N 0.000
GLYMA15G20380 Glycine max GLYMA15G20380 N 0.000
OBART08G16790 Oryza barthii OBART08G16790 N 0.000
GLYMA07G05050 Glycine max GLYMA07G05050 N 0.000
fgenesh2_kg.5__785__AT3G43240.1 Arabidopsis lyrata fgenesh2_kg.5__785__AT3G43240.1 N 0.000
F775_26930 Aegilops tauschii F775_26930 N 0.000
BRADI4G31016 Brachypodium distachyon BRADI4G31016 N 0.000
BRADI3G37397 Brachypodium distachyon BRADI3G37397 N 0.000
BRADI3G37377 Brachypodium distachyon BRADI3G37377 N 0.000
Bra034957 Brassica rapa Bra034957 N 0.000
Bo3g127310 Brassica oleracea Bo3g127310 N 0.000
BGIOSGA029700 Oryza indica BGIOSGA029700 N 0.000
BGIOSGA026888 Oryza indica BGIOSGA026888 N 0.000
ARID4 Arabidopsis thaliana AT3G43240 N 0.000
ORGLA09G0085300 Oryza glaberrima ORGLA09G0085300 N 0.000
Solyc12g049570.1 Solanum lycopersicum Solyc12g049570.1 N 0.000
Si029019m.g Setaria italica Si029019m.g N 0.000
Si013293m.g Setaria italica Si013293m.g N 0.000
Sb07g022155 Sorghum bicolor Sb07g022155 N 0.000
Sb02g025515 Sorghum bicolor Sb02g025515 N 0.000
PRUPE_ppa001668mg Prunus persica PRUPE_ppa001668mg N 0.000
POPTR_0018s07250 Populus trichocarpa POPTR_0018s07250 N 0.000
POPTR_0006s13780 Populus trichocarpa POPTR_0006s13780 N 0.000
PGSC0003DMG400028852 Solanum tuberosum PGSC0003DMG400028852 N 0.000
OS08G0451400 Oryza sativa OS08G0451400 N 0.000
ORUFI09G12160 Oryza rufipogon ORUFI09G12160 N 0.000
ORUFI08G18650 Oryza rufipogon ORUFI08G18650 N 0.000
AMTR_s00129p00111730 Amborella trichopoda AMTR_s00129p00111730 N 0.000
ORGLA08G0146400 Oryza glaberrima ORGLA08G0146400 N 0.000
OPUNC09G09840 Oryza punctata OPUNC09G09840 N 0.000
OPUNC08G14680 Oryza punctata OPUNC08G14680 N 0.000
ONIVA09G11150 Oryza nivara ONIVA09G11150 N 0.000
ONIVA08G18320 Oryza nivara ONIVA08G18320 N 0.000
OMERI01G15670 Oryza meridionalis OMERI01G15670 N 0.000
OLONG_022000 Oryza longistaminata OLONG_022000 N 0.000
OLONG_007387 Oryza longistaminata OLONG_007387 N 0.000
OGLUM09G11760 Oryza glumaepatula OGLUM09G11760 N 0.000
OGLUM08G17510 Oryza glumaepatula OGLUM08G17510 N 0.000
OBART09G11370 Oryza barthii OBART09G11370 N 0.000