Alligator_sinensis_CCG005029.1 (Alligator sinensis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Alligator_sinensis_CCG005029.1 T165285_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.985 0.985
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.985 0.985
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.985 0.985
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.985 0.985
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.803 0.803
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005029.1 CSD 30 99

Links

Other CSD family TFs
Other Alligator sinensis TFs

387 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Npas2 Mus musculus ENSMUSG00000026077 D 0.000
NPAS2 Homo sapiens ENSG00000170485 D 0.000
NPAS2 Taeniopygia guttata ENSTGUG00000010003 I 0.000
NPAS2 Oryctolagus cuniculus ENSOCUG00000002384 I 0.000
NPAS2 Otolemur garnettii ENSOGAG00000014490 I 0.000
ENSPANG00000000546 Papio anubis ENSPANG00000000546 I 0.000
NPAS2 Procavia capensis ENSPCAG00000004689 I 0.000
ENSPPYG00000012101 Pongo abelii ENSPPYG00000012101 I 0.000
NPAS2 Pan troglodytes ENSPTRG00000012287 I 0.000
NPAS2 Pteropus vampyrus ENSPVAG00000011717 I 0.000
Npas2 Rattus norvegicus ENSRNOG00000013408 I 0.000
ENSSHAG00000010526 Sarcophilus harrisii ENSSHAG00000010526 I 0.000
NPAS2 Sus scrofa ENSSSCG00000008171 I 0.000
ENSSTOG00000008934 Ictidomys tridecemlineatus ENSSTOG00000008934 I 0.000
NPAS2 Tupaia belangeri ENSTBEG00000012008 I 0.000
ENSOANG00000022558 Ornithorhynchus anatinus ENSOANG00000022558 I 0.000
ENSTSYG00000005382 Tarsius syrichta ENSTSYG00000005382 I 0.000
NPAS2 Tursiops truncatus ENSTTRG00000016446 I 0.000
NPAS2 Vicugna pacos ENSVPAG00000001242 I 0.000
Aan_R003197 Calypte anna Aan_R003197 I 0.000
Afo_R015956 Aptenodytes forsteri Afo_R015956 I 0.000
Cmyd_10011837 Chelonia mydas Cmyd_10011837 I 0.000
ENSMMUP00000012928 Macaca fascicularis ENSMMUP00000012928 I 0.000
ENSP00000338283-D1 Bos grunniens ENSP00000338283-D1 I 0.000
Gfo_R005610 Geospiza fortis Gfo_R005610 I 0.000
Ogr16001 Ophisaurus gracilis Ogr16001 I 0.000
Pvit_02251 Pogona vitticeps Pvit_02251 I 0.000
Tal_R012319 Tyto alba Tal_R012319 I 0.000
NPAS2 Gallus gallus ENSGALG00000016774 I 0.000
ENSAPLG00000016315 Anas platyrhynchos ENSAPLG00000016315 I 0.000
NPAS2 Bos taurus ENSBTAG00000019697 I 0.000
NPAS2 Canis familiaris ENSCAFG00000002223 I 0.000
NPAS2 Choloepus hoffmanni ENSCHOG00000008122 I 0.000
NPAS2 Callithrix jacchus ENSCJAG00000021202 I 0.000
ENSCPOG00000002470 Cavia porcellus ENSCPOG00000002470 I 0.000
ENSCSAG00000017176 Chlorocebus sabaeus ENSCSAG00000017176 I 0.000
NPAS2 Dasypus novemcinctus ENSDNOG00000002520 I 0.000
ENSDORG00000015727 Dipodomys ordii ENSDORG00000015727 I 0.000
NPAS2 Equus caballus ENSECAG00000000171 I 0.000
ENSFALG00000003827 Ficedula albicollis ENSFALG00000003827 I 0.000
NPAS2 Felis catus ENSFCAG00000005306 I 0.000
ENSOARG00000013285 Ovis aries ENSOARG00000013285 I 0.000
NPAS2 Gorilla gorilla ENSGGOG00000006420 I 0.000
ENSLACG00000011834 Latimeria chalumnae ENSLACG00000011834 I 0.000
NPAS2 Loxodonta africana ENSLAFG00000016336 I 0.000
ENSMEUG00000000949 Macropus eugenii ENSMEUG00000000949 I 0.000
NPAS2 Meleagris gallopavo ENSMGAG00000014799 I 0.000
NPAS2 Microcebus murinus ENSMICG00000016027 I 0.000
NPAS2 Macaca mulatta ENSMMUG00000009871 I 0.000
NPAS2 Monodelphis domestica ENSMODG00000001691 I 0.000
ENSMPUG00000012117 Mustela putorius furo ENSMPUG00000012117 I 0.000
ENSNLEG00000014404 Nomascus leucogenys ENSNLEG00000014404 I 0.000
NPAS2 Anolis carolinensis ENSACAG00000007946 I 0.000