ENSBTAP00000012735-D1 (Bos grunniens)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 ENSBTAP00000012735-D1 T165305_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		1.000 1.000
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		1.000 1.000
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		1.000 1.000
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		1.000 1.000
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.818 0.818
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000012735-D1 CSD 6 75

Links

Other CSD family TFs
Other Bos grunniens TFs

411 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G14600 Arabidopsis thaliana AT1G14600 D
AMTR_s00044p00042560 Amborella trichopoda AMTR_s00044p00042560 I
AT4G04605 Arabidopsis thaliana AT4G04605 I
BGIOSGA008790 Oryza indica BGIOSGA008790 I
BGIOSGA011527 Oryza indica BGIOSGA011527 I
BGIOSGA016936 Oryza indica BGIOSGA016936 I
BGIOSGA031479 Oryza indica BGIOSGA031479 I
Bo2g104640 Brassica oleracea Bo2g104640 I
Bo5g019810 Brassica oleracea Bo5g019810 I
Bra026202 Brassica rapa Bra026202 I
F775_03870 Aegilops tauschii F775_03870 I
F775_04264 Aegilops tauschii F775_04264 I
F775_04777 Aegilops tauschii F775_04777 I
fgenesh2_kg.1__1592__AT1G14600.1 Arabidopsis lyrata fgenesh2_kg.1__1592__AT1G14600.1 I
GRMZM2G069525 Zea mays GRMZM2G069525 I
GRMZM2G090230 Zea mays GRMZM2G090230 I
GRMZM2G374986 Zea mays GRMZM2G374986 I
GRMZM5G887276 Zea mays GRMZM5G887276 I
GSMUA_Achr7G03510_001 Musa acuminata GSMUA_Achr7G03510_001 I
LPERR02G22340 Leersia perrieri LPERR02G22340 I
LPERR03G02180 Leersia perrieri LPERR03G02180 I
LPERR04G17940 Leersia perrieri LPERR04G17940 I
LPERR10G13190 Leersia perrieri LPERR10G13190 I
MLOC_56821 Hordeum vulgare MLOC_56821 I
OB02G34860 Oryza brachyantha OB02G34860 I
OB03G12320 Oryza brachyantha OB03G12320 I
OB04G28940 Oryza brachyantha OB04G28940 I
OB10G24340 Oryza brachyantha OB10G24340 I
OBART02G27470 Oryza barthii OBART02G27470 I
OBART03G02370 Oryza barthii OBART03G02370 I
OBART04G21930 Oryza barthii OBART04G21930 I
OBART10G17270 Oryza barthii OBART10G17270 I
OGLUM02G28020 Oryza glumaepatula OGLUM02G28020 I
OGLUM03G02310 Oryza glumaepatula OGLUM03G02310 I
OGLUM04G21960 Oryza glumaepatula OGLUM04G21960 I
OLONG_000346 Oryza longistaminata OLONG_000346 I
OLONG_004539 Oryza longistaminata OLONG_004539 I
OLONG_011732 Oryza longistaminata OLONG_011732 I
OLONG_016687 Oryza longistaminata OLONG_016687 I
OMERI02G26760 Oryza meridionalis OMERI02G26760 I
OMERI03G02220 Oryza meridionalis OMERI03G02220 I
OMERI04G18450 Oryza meridionalis OMERI04G18450 I
OMERI10G13750 Oryza meridionalis OMERI10G13750 I
ONIVA02G30300 Oryza nivara ONIVA02G30300 I
ONIVA03G01980 Oryza nivara ONIVA03G01980 I
ONIVA04G20480 Oryza nivara ONIVA04G20480 I
ONIVA10G19340 Oryza nivara ONIVA10G19340 I
OPUNC02G25130 Oryza punctata OPUNC02G25130 I
OPUNC03G02160 Oryza punctata OPUNC03G02160 I
OPUNC04G19690 Oryza punctata OPUNC04G19690 I
OPUNC10G15550 Oryza punctata OPUNC10G15550 I
ORGLA02G0236600 Oryza glaberrima ORGLA02G0236600 I
ORGLA03G0021400 Oryza glaberrima ORGLA03G0021400 I
ORGLA04G0189700 Oryza glaberrima ORGLA04G0189700 I
ORGLA10G0122800 Oryza glaberrima ORGLA10G0122800 I
ORUFI02G28930 Oryza rufipogon ORUFI02G28930 I
ORUFI03G02110 Oryza rufipogon ORUFI03G02110 I
ORUFI04G23540 Oryza rufipogon ORUFI04G23540 I
ORUFI10G18320 Oryza rufipogon ORUFI10G18320 I
OS04G0566600 Oryza sativa OS04G0566600 I
Sb01g048420 Sorghum bicolor Sb01g048420 I
Sb06g025600 Sorghum bicolor Sb06g025600 I
Si011884m.g Setaria italica Si011884m.g I
Si019625m.g Setaria italica Si019625m.g I
Si036127m.g Setaria italica Si036127m.g I
Si039234m.g Setaria italica Si039234m.g I
Traes_1BL_E2629CBC1 Triticum aestivum Traes_1BL_E2629CBC1 I
Traes_7AL_9A1395EC7 Triticum aestivum Traes_7AL_9A1395EC7 I
TRIUR3_34172 Triticum urartu TRIUR3_34172 I
Cla017202 Citrullus lanatus Cla017202 I
Pm010236 Prunus mume Pm010236 I
mgf019744m Mimulus guttatus mgf019744m I
Bostr.24340s0004 Boechera stricta Bostr.24340s0004 I
Bostr.7199s0006 Boechera stricta Bostr.7199s0006 I
Cagra.3501s0036 Capsella grandiflora Cagra.3501s0036 I
Cagra.4137s0009 Capsella grandiflora Cagra.4137s0009 I
Carubv10003097m.g Capsella rubella Carubv10003097m.g I
Carubv10010057m.g Capsella rubella Carubv10010057m.g I
Ciclev10018145m.g Citrus clementina Ciclev10018145m.g I
orange1.1g043383m.g Citrus sinensis orange1.1g043383m.g I
Pavir.Aa00827 Panicum virgatum Pavir.Aa00827 I
Pavir.Ab02674 Panicum virgatum Pavir.Ab02674 I
Pavir.Gb01051 Panicum virgatum Pavir.Gb01051 I
Pavir.Ia04483 Panicum virgatum Pavir.Ia04483 I
Pavir.Ib00180 Panicum virgatum Pavir.Ib00180 I
Pavir.J09702 Panicum virgatum Pavir.J09702 I
Pavir.J33581 Panicum virgatum Pavir.J33581 I
Thhalv10008620m.g Eutrema salsugineum Thhalv10008620m.g I
BGIOSGA023442 Oryza indica BGIOSGA023442 N
BRADI1G32370 Brachypodium distachyon BRADI1G32370 N
BRADI5G18590 Brachypodium distachyon BRADI5G18590 N
F775_02595 Aegilops tauschii F775_02595 N
GRMZM2G454449 Zea mays GRMZM2G454449 N
LPERR06G20200 Leersia perrieri LPERR06G20200 N
MLOC_53840 Hordeum vulgare MLOC_53840 N
MLOC_53958 Hordeum vulgare MLOC_53958 N
MLOC_67081 Hordeum vulgare MLOC_67081 N
MLOC_67085 Hordeum vulgare MLOC_67085 N
OB06G32040 Oryza brachyantha OB06G32040 N
OBART06G24290 Oryza barthii OBART06G24290 N
OGLUM06G25550 Oryza glumaepatula OGLUM06G25550 N
OLONG_026929 Oryza longistaminata OLONG_026929 N
OMERI06G24530 Oryza meridionalis OMERI06G24530 N
ONIVA06G30620 Oryza nivara ONIVA06G30620 N
OPUNC06G22010 Oryza punctata OPUNC06G22010 N
ORGLA06G0204400 Oryza glaberrima ORGLA06G0204400 N
ORUFI06G26110 Oryza rufipogon ORUFI06G26110 N
OS06G0670300 Oryza sativa OS06G0670300 N
Sb10g026930 Sorghum bicolor Sb10g026930 N
Si007179m.g Setaria italica Si007179m.g N
Traes_7AL_BF6FD97DA Triticum aestivum Traes_7AL_BF6FD97DA N
Traes_7DL_FEA7D3672 Triticum aestivum Traes_7DL_FEA7D3672 N
Pavir.Da00200 Panicum virgatum Pavir.Da00200 N
Pavir.Db00422 Panicum virgatum Pavir.Db00422 N