CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TTRE_0000086601
(
Trichuris trichiura
)
CUT,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
TTRE_0000086601
T167642_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
onecut
M03716_2.00
Drosophila melanogaster
NNVRATCRATAHNN
NNDTATYGATYBNN
SELEX
Nitta et al.(2015)
onecut_1
0.925
0.925
onecut
M03717_2.00
Drosophila melanogaster
NNTATYGATTWNN
NNWAATCRATANN
SELEX
Nitta et al.(2015)
onecut_2
0.925
0.925
onecut
M06472_2.00
Drosophila melanogaster
HAATCAA
TTGATTD
B1H
Mathelier et al.(2014)
MA0235.1
0.925
0.925
ONECUT2
M02942_2.00
Homo sapiens
DDTATYGATTTTYN
NRAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT2_1
0.888
0.888
ONECUT2
M03714_2.00
Homo sapiens
NDDTATCGATYBNN
NNVRATCGATAHHN
SELEX
Nitta et al.(2015)
ONECUT2_1
0.888
0.888
ONECUT2
M04667_2.00
Homo sapiens
NNATYGATYN
NRATCRATNN
SELEX
Yin et al.(2017)
ONECUT2_eDBD_HT-SELEX
0.888
0.888
ONECUT2
M04669_2.00
Homo sapiens
NNSGATCGATAH
DTATCGATCSNN
SELEX
Yin et al.(2017)
ONECUT2_FL_HT-SELEX_1
0.888
0.888
ONECUT2
M04670_2.00
Homo sapiens
NKATYGATYDN
NHRATCRATMN
SELEX
Yin et al.(2017)
ONECUT2_FL_HT-SELEX_2
0.888
0.888
ONECUT2
M10417_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OC2_Q3
0.888
0.888
ONECUT2
M04668_2.00
Homo sapiens
DTATTGATYN
NRATCAATAH
SELEX
Yin et al.(2017)
ONECUT2_eDBD_Methyl-HT-SELEX
0.888
0.888
ONECUT2
M04671_2.00
Homo sapiens
ACSGATCAATAM
KTATTGATCSGT
SELEX
Yin et al.(2017)
ONECUT2_FL_Methyl-HT-SELEX_1
0.888
0.888
ONECUT2
M04672_2.00
Homo sapiens
DTATTGATTDN
NHAATCAATAH
SELEX
Yin et al.(2017)
ONECUT2_FL_Methyl-HT-SELEX_2
0.888
0.888
ONECUT1
M02943_2.00
Homo sapiens
DDTATYGATTTTHN
NDAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT1_1
0.881
0.881
ONECUT1
M02944_2.00
Homo sapiens
DDTATYGATTTTHN
NDAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT1_2
0.881
0.881
ONECUT3
M02945_2.00
Homo sapiens
DWTATYGATTTTYN
NRAAAATCRATAWH
SELEX
Jolma et al.(2013)
ONECUT3_1
0.881
0.881
ONECUT1
M03715_2.00
Homo sapiens
HRATCGATAHH
DDTATCGATYD
SELEX
Nitta et al.(2015)
ONECUT1_1
0.881
0.881
ONECUT1
M04673_2.00
Homo sapiens
NNATCGATYN
NRATCGATNN
SELEX
Yin et al.(2017)
ONECUT1_eDBD_HT-SELEX
0.881
0.881
ONECUT1
M04675_2.00
Homo sapiens
NNCGATCGATAN
NTATCGATCGNN
SELEX
Yin et al.(2017)
ONECUT1_FL_HT-SELEX
0.881
0.881
ONECUT3
M04677_2.00
Homo sapiens
NNATYGATYN
NRATCRATNN
SELEX
Yin et al.(2017)
ONECUT3_eDBD_HT-SELEX
0.881
0.881
ONECUT1
M09022_2.00
Homo sapiens
NBBATTGATYN
NRATCAATVVN
Misc
Kulakovskiy et al.(2013)
HNF6_HUMAN.H11MO.0.B
0.881
0.881
Onecut1
M09026_2.00
Mus musculus
NBBATTGATYN
NRATCAATVVN
Misc
Kulakovskiy et al.(2013)
HNF6_MOUSE.H11MO.0.A
0.881
0.881
Onecut1
M09520_2.00
Mus musculus
NRATCRATMN
NKATYGATYN
Misc
Heinz et al.(2010)
Liver-Hnf6_ERP000394
0.881
0.881
ONECUT1
M10418_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF6_Q4
0.881
0.881
ONECUT1
M10419_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF6_Q6_01
0.881
0.881
ONECUT1
M04674_2.00
Homo sapiens
NTATTGATYN
NRATCAATAN
SELEX
Yin et al.(2017)
ONECUT1_eDBD_Methyl-HT-SELEX
0.881
0.881
ONECUT1
M04676_2.00
Homo sapiens
RYSRATCAATAM
KTATTGATYSRY
SELEX
Yin et al.(2017)
ONECUT1_FL_Methyl-HT-SELEX
0.881
0.881
ONECUT3
M04678_2.00
Homo sapiens
NTATTGATYN
NRATCAATAN
SELEX
Yin et al.(2017)
ONECUT3_eDBD_Methyl-HT-SELEX
0.881
0.881
ceh-48
M01905_2.00
Caenorhabditis elegans
NNATYGRNN
NNYCRATNN
PBM
Weirauch et al.(2014)
pTH8982
0.873
0.873
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
TTRE_0000086601
CUT
360
438
DLEEINTKELAQRISAELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMLKWLQEPEFQRMSALR
TTRE_0000086601
Homeodomain
459
513
KKPRLVFTDIQRRTLQAIFKETKRPSKEMQVTIAQQLGLDVSTVANFFMNARRRG
Links
Other
CUT,Homeodomain
family TFs
Other
Trichuris trichiura
TFs
313 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy