Cucsa.241900 (Cucumis sativus)
Dof

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02701 (zf-Dof) IPR003851 Cucsa.241900 T171518_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT3G52440
M06852_2.00
Arabidopsis thaliana
DYHMCTTTWTN

NAWAAAGKDRH
Dap-seq
OMalley et al.(2016)
AT3G52440_col_a
0.915 0.915
AT3G52440
M06853_2.00
Arabidopsis thaliana
WWDDYHMCTTTTTNNHHYYWW

WWRRDDNNAAAAAGKDRHHWW
Dap-seq
OMalley et al.(2016)
AT3G52440_colamp_a
0.915 0.915
PK05671.1
M01215_2.00
Cannabis sativa
NCDWWNNN

NNNWWHGN
PBM
Lambert et al.(2019)
pTH10101
0.814 0.814
DOF2.5
M01212_2.00
Arabidopsis thaliana
NNNCKTTWNN

NNWAAMGNNN
PBM
Lambert et al.(2019)
pTH11562
0.797 0.797
DOF5.3
M01947_2.00
Arabidopsis thaliana
CKTTNNN

NNNAAMG
PBM
Weirauch et al.(2014)
pTH7182
0.797 0.797
PK15337.1
M01219_2.00
Cannabis sativa
NCTTTHN

NDAAAGN
PBM
Lambert et al.(2019)
pTH10186
0.797 0.797
DOF2.5
M06843_2.00
Arabidopsis thaliana
DYHMCTTTTTN

NAAAAAGKDRH
Dap-seq
OMalley et al.(2016)
DAG2_col_a
0.797 0.797
DOF2.5
M06844_2.00
Arabidopsis thaliana
HWDYHMCTTTTTN

NAAAAAGKDRHWD
Dap-seq
OMalley et al.(2016)
DAG2_colamp_a
0.797 0.797
DOF1.8
M01939_2.00
Arabidopsis thaliana
NNNCKTTHNN

NNDAAMGNNN
PBM
Weirauch et al.(2014)
pTH7256
0.780 0.780
DOF1.8
M01062_2.00
Arabidopsis thaliana
NHVCTTTWH

DWAAAGBDN
PBM
Sullivan et al.(2014)
pTH7653
0.780 0.780
PK07031.1
M01216_2.00
Cannabis sativa
NCKTTHN

NDAAMGN
PBM
Lambert et al.(2019)
pTH11435
0.780 0.780
DOF1.8
M06835_2.00
Arabidopsis thaliana
WWWYHMCTTTTTNNNHNHW

WDNDNNNAAAAAGKDRWWW
Dap-seq
OMalley et al.(2016)
At1g64620_100ng20cy_b
0.780 0.780
DOF1.8
M06836_2.00
Arabidopsis thaliana
NHHMCTTTTTN

NAAAAAGKDDN
Dap-seq
OMalley et al.(2016)
At1g64620_colamp_a
0.780 0.780
DOF2.4
M01940_2.00
Arabidopsis thaliana
NCKTTWN

NWAAMGN
PBM
Weirauch et al.(2014)
pTH7912
0.763 0.763
e_gw1.170.52.1
M01952_2.00
Physcomitrella patens
NNNCTTTHNN

NNDAAAGNNN
PBM
Weirauch et al.(2014)
pTH8464
0.763 0.763
gw1.12.257.1
M01955_2.00
Physcomitrella patens
NNDDNNN

NNNHHNN
PBM
Weirauch et al.(2014)
pTH8651
0.763 0.763
PK03929.1
M01214_2.00
Cannabis sativa
NNNCTTTWNN

NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10165
0.763 0.763
PK10955.1
M01217_2.00
Cannabis sativa
VCTTTWNN

NNWAAAGB
PBM
Lambert et al.(2019)
pTH10264
0.763 0.763
PK20317.1
M01221_2.00
Cannabis sativa
CKTTWNN

NNWAAMG
PBM
Lambert et al.(2019)
pTH11298
0.763 0.763
PK20555.1
M01222_2.00
Cannabis sativa
NNNCTTTWNN

NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10144
0.763 0.763
DOF2.4
M06841_2.00
Arabidopsis thaliana
HHWWTTHMCTTTTTN

NAAAAAGKDAAWWDD
Dap-seq
OMalley et al.(2016)
dof24_col_a
0.763 0.763
DOF2.4
M06842_2.00
Arabidopsis thaliana
HHMCTTTWTNNNNHN

NDNNNNAWAAAGKDD
Dap-seq
OMalley et al.(2016)
dof24_colamp_a
0.763 0.763
OBP3
M06854_2.00
Arabidopsis thaliana
BTHWCTTTTYNHYTTYWYYHH

DDRRWRAARDNRAAAAGWDAV
Dap-seq
OMalley et al.(2016)
OBP3_col_a
0.763 0.763
OBP3
M06855_2.00
Arabidopsis thaliana
NHNWHNHHNYWNCTTTTYN

NRAAAAGNWRNDDNDWNDN
Dap-seq
OMalley et al.(2016)
OBP3_colamp_a
0.763 0.763
DOF5.4
M01948_2.00
Arabidopsis thaliana
NDCGTTAWCN

NGWTAACGHN
PBM
Weirauch et al.(2014)
pTH7160
0.746 0.746
DOF5.4
M01949_2.00
Arabidopsis thaliana
NWACGTTWHNN

NNDWAACGTWN
PBM
Weirauch et al.(2014)
pTH7535
0.746 0.746
DOF5.6
M01063_2.00
Arabidopsis thaliana
NYDDWNNNN

NNNNWHHRN
PBM
Sullivan et al.(2014)
pTH7192
0.746 0.746
DOF5.6
M01950_2.00
Arabidopsis thaliana
NCKTTWNN

NNWAAMGN
PBM
Weirauch et al.(2014)
pTH7655
0.746 0.746
DOF5.6
M06867_2.00
Arabidopsis thaliana
HHTYHNCTTTTTNHHHHHHHH

DDDDDDDDNAAAAAGNDRADD
Dap-seq
OMalley et al.(2016)
At5g62940_col_a
0.746 0.746
DOF5.4
M06865_2.00
Arabidopsis thaliana
DNWNYHMCTTTTTN

NAAAAAGKDRNWNH
Dap-seq
OMalley et al.(2016)
OBP4_col_a
0.746 0.746
DOF5.4
M06866_2.00
Arabidopsis thaliana
HWDYHVCTTTTTNNNHHNH

DNDDNNNAAAAAGBDRHWD
Dap-seq
OMalley et al.(2016)
OBP4_colamp_a
0.746 0.746
Q6RK62_WHEAT
M10441_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PBF_Q2_01
0.746 0.746
DOF3.1
M01942_2.00
Arabidopsis thaliana
NCKTTNNN

NNNAAMGN
PBM
Weirauch et al.(2014)
pTH8190
0.729 0.729
DOF3.2
M01943_2.00
Arabidopsis thaliana
NHDNNNNN

NNNNNHDN
PBM
Weirauch et al.(2014)
pTH7183
0.729 0.729
PK14080.1
M01218_2.00
Cannabis sativa
NCDTTHNN

NNDAAHGN
PBM
Lambert et al.(2019)
pTH10123
0.729 0.729
PK23763.1
M01224_2.00
Cannabis sativa
NNNCTTTWN

NWAAAGNNN
PBM
Lambert et al.(2019)
pTH10194
0.729 0.729
DOF2.2
M06839_2.00
Arabidopsis thaliana
HHHYHHHHYWTYHNCTTTTTN

NAAAAAGNDRAWRDDDDRDDD
Dap-seq
OMalley et al.(2016)
AT2G28810_col_a
0.729 0.729
DOF2.2
M06840_2.00
Arabidopsis thaliana
NYHNCTTTWTNNNHH

DDNNNAWAAAGNDRN
Dap-seq
OMalley et al.(2016)
AT2G28810_colamp_a
0.729 0.729
DOF3.2
M06847_2.00
Arabidopsis thaliana
NYHVCTTTTTNNHHTHHNN

NNDDADDNNAAAAAGBDRN
Dap-seq
OMalley et al.(2016)
At3g45610_col_a
0.729 0.729
DOF3.2
M06848_2.00
Arabidopsis thaliana
NNHDDYHVCTTTTTB

VAAAAAGBDRHHDNN
Dap-seq
OMalley et al.(2016)
At3g45610_colamp_a
0.729 0.729
DOF5.1
M06863_2.00
Arabidopsis thaliana
HYHYWYHHHYTTWNCTTTTTN

NAAAAAGNWAARDDDRWRDRD
Dap-seq
OMalley et al.(2016)
AT5G02460_col_a
0.729 0.729
DOF5.1
M06864_2.00
Arabidopsis thaliana
NHDYHRCTTTWTNNHNNHN

NDNNDNNAWAAAGYDRHDN
Dap-seq
OMalley et al.(2016)
AT5G02460_colamp_a
0.729 0.729
PBF
M02675_2.00
Zea mays
RCTTT

AAAGY
SELEX
Mathelier et al.(2014)
MA0064.1
0.729 0.729
PBF
M10438_2.00
Zea mays
BBDCTTTWNWD

HWNWAAAGHVV
Transfac
Matys et al.(2006)
P$PBF_01
0.729 0.729
DOF5.7
M00862_2.00
Arabidopsis thaliana
NNNCKTTN

NAAMGNNN
PBM
Franco-Zorrilla et al.(2014)
Dof5.7
0.712 0.712
PK01144.1
M01213_2.00
Cannabis sativa
NCTTTWN

NWAAAGN
PBM
Lambert et al.(2019)
pTH10160
0.695 0.695
DOF1.7
M06833_2.00
Arabidopsis thaliana
HNNHWTYWNCTTTTYNHNHHN

NDDNDNRAAAAGNWRAWDNND
Dap-seq
OMalley et al.(2016)
Adof1_col_a
0.695 0.695
DOF1.7
M06834_2.00
Arabidopsis thaliana
NNHNNYWRCTTTTTNNHHNNH

DNNDDNNAAAAAGYWRNNDNN
Dap-seq
OMalley et al.(2016)
Adof1_colamp_a
0.695 0.695
Dof2
M02674_2.00
Zea mays
NGCTTT

AAAGCN
SELEX
Mathelier et al.(2014)
MA0020.1
0.695 0.695
Dof3
M02676_2.00
Zea mays
BRCTTT

AAAGYV
SELEX
Mathelier et al.(2014)
MA0021.1
0.695 0.695
MNB1A
M02677_2.00
Zea mays
DCTTT

AAAGH
SELEX
Mathelier et al.(2014)
MA0053.1
0.695 0.695
MNB1A
M10440_2.00
Zea mays
NNDCTTTWNNN

NNNWAAAGHNN
Transfac
Matys et al.(2006)
P$DOF1_01
0.695 0.695
Dof2
M10436_2.00
Zea mays
NNDCTTTWNND

HNNWAAAGHNN
Transfac
Matys et al.(2006)
P$DOF2_01
0.695 0.695
Dof3
M10439_2.00
Zea mays
NBNCTTTNNBN

NVNNAAAGNVN
Transfac
Matys et al.(2006)
P$DOF3_01
0.695 0.695
Dof2
M10437_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DOF_Q2
0.695 0.695
DOF3.4
M06851_2.00
Arabidopsis thaliana
NNNHYHYHHHWYYHNCTTTWB

VWAAAGNDRRWDDDRDRDNNN
Dap-seq
OMalley et al.(2016)
OBP1_col_a
0.678 0.678
CDF5
M06837_2.00
Arabidopsis thaliana
HHWKYDCTTTTHHYTTTHYHYYWHNHH

DDNDWRRDRDAAARDDAAAAGHRMWDD
Dap-seq
OMalley et al.(2016)
AT1G69570_col_a
0.661 0.661
CDF5
M06838_2.00
Arabidopsis thaliana
YVCTTTTNNYTTWHHHBHBNN

NNVDVDDDWAARNNAAAAGBR
Dap-seq
OMalley et al.(2016)
AT1G69570_colamp_a
0.661 0.661
DOF4.3
M06857_2.00
Arabidopsis thaliana
AAAGNYRCTTT

AAAGYRNCTTT
Dap-seq
OMalley et al.(2016)
dof43_col_a
0.661 0.661
DOF4.3
M06858_2.00
Arabidopsis thaliana
NWAAAGHRVCTTTW

WAAAGBYDCTTTWN
Dap-seq
OMalley et al.(2016)
dof43_colamp_a
0.661 0.661
DOF4.7
M01945_2.00
Arabidopsis thaliana
NCKTTHNNN

NNNDAAMGN
PBM
Weirauch et al.(2014)
pTH7189
0.644 0.644
gw1.385.26.1
M01956_2.00
Physcomitrella patens
NNNCKTTWNN

NNWAAMGNNN
PBM
Weirauch et al.(2014)
pTH8458
0.644 0.644
PK16340.1
M01220_2.00
Cannabis sativa
CKTTWNN

NNWAAMG
PBM
Lambert et al.(2019)
pTH10129
0.644 0.644
DOF1.6
M06831_2.00
Arabidopsis thaliana
HYACTTTWNNN

NNNWAAAGTRD
Dap-seq
OMalley et al.(2016)
AT1G47655_col_a
0.644 0.644
DOF1.6
M06832_2.00
Arabidopsis thaliana
YYYTTDNCTTTWYBN

NVRWAAAGNHAARRR
Dap-seq
OMalley et al.(2016)
AT1G47655_colamp_a
0.644 0.644
DOF4.7
M06861_2.00
Arabidopsis thaliana
HHHHYHHHNHHHHHHHWWTWWCTTTTTN

NAAAAAGWWAWWDDDDDDDNDDDRDDDD
Dap-seq
OMalley et al.(2016)
At4g38000_col_a
0.644 0.644
DOF4.7
M06862_2.00
Arabidopsis thaliana
NYWACTTTWTB

VAWAAAGTWRN
Dap-seq
OMalley et al.(2016)
At4g38000_colamp_a
0.644 0.644
DOF1.5
M01938_2.00
Arabidopsis thaliana
ACKTTWWH

DWWAAMGT
PBM
Weirauch et al.(2014)
pTH7676
0.627 0.627
CDF3
M01944_2.00
Arabidopsis thaliana
NHVCTTTWN

NWAAAGBDN
PBM
Weirauch et al.(2014)
pTH7659
0.627 0.627
CDF2
M01946_2.00
Arabidopsis thaliana
NHVCTTTWHN

NDWAAAGBDN
PBM
Weirauch et al.(2014)
pTH7574
0.627 0.627
e_gw1.149.93.1
M01951_2.00
Physcomitrella patens
NCDTTNNN

NNNAAHGN
PBM
Weirauch et al.(2014)
pTH8463
0.627 0.627
e_gw1.392.16.1
M01953_2.00
Physcomitrella patens
NNCTTTWNN

NNWAAAGNN
PBM
Weirauch et al.(2014)
pTH8686
0.627 0.627
estExt_fgenesh1_pg.C_370003
M01954_2.00
Physcomitrella patens
NNNNHDNNNN

NNNNHDNNNN
PBM
Weirauch et al.(2014)
pTH8469
0.627 0.627
DOF5.8
M06868_2.00
Arabidopsis thaliana
HHNHHYHHHHYTTTHNCTTTTKNNHHNHW

WDNDDNNMAAAAGNDAAARDDDDRDDNDD
Dap-seq
OMalley et al.(2016)
AT5G66940_col_a
0.627 0.627
DOF5.8
M06869_2.00
Arabidopsis thaliana
NNHNDYWRCTTTTTNNHYHNH

DNDRDNNAAAAAGYWRHNDNN
Dap-seq
OMalley et al.(2016)
AT5G66940_colamp_a
0.627 0.627
CDF3
M06849_2.00
Arabidopsis thaliana
HWTDYMCTTTTTNNHHHHW

WDDDDNNAAAAAGKRHAWD
Dap-seq
OMalley et al.(2016)
CDF3_col_a
0.627 0.627
CDF3
M06850_2.00
Arabidopsis thaliana
DDYRCTTTTHNNHYTTTN

NAAARDNNDAAAAGYRHH
Dap-seq
OMalley et al.(2016)
CDF3_colamp_a
0.627 0.627
DOF1.5
M06829_2.00
Arabidopsis thaliana
HWTDYMCTTTTTNHHHBHHNN

NNDDVDDDNAAAAAGKRHAWD
Dap-seq
OMalley et al.(2016)
COG1_col_a
0.627 0.627
DOF1.5
M06830_2.00
Arabidopsis thaliana
NHWWTDYACTTTTTN

NAAAAAGTRHAWWDN
Dap-seq
OMalley et al.(2016)
COG1_colamp_a
0.627 0.627
DOF4.5
M06859_2.00
Arabidopsis thaliana
AAAKYHDCTTTWTN

NAWAAAGHDRMTTT
Dap-seq
OMalley et al.(2016)
dof45_col_a
0.627 0.627
DOF4.5
M06860_2.00
Arabidopsis thaliana
WAAAGYYDCTTTWDN

NHWAAAGHRRCTTTW
Dap-seq
OMalley et al.(2016)
dof45_colamp_a
0.627 0.627
PK23009.1
M01223_2.00
Cannabis sativa
NNHVCTTTWN

NWAAAGBDNN
PBM
Lambert et al.(2019)
pTH10279
0.610 0.610
fgenesh1_pg.C_Chr_08.0001000114
M01957_2.00
Ostreococcus tauri
NCKWWNNN

NNNWWMGN
PBM
Weirauch et al.(2014)
pTH9431
0.576 0.576
DOF4.2
M06856_2.00
Arabidopsis thaliana
NNHWWWRCCTTTTTNNHNH

DNDNNAAAAAGGYWWWDNN
Dap-seq
OMalley et al.(2016)
dof42_col_a
0.525 0.525
For this family, TFs with SR scores > 0.508 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.241900.1 Dof 10 68

Links

Other Dof family TFs
Other Cucumis sativus TFs

1960 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
anac071 Arabidopsis thaliana AT4G17980 D
anac096 Arabidopsis thaliana AT5G46590 D
cassava22941.valid.m1 Manihot esculenta cassava22941.valid.m1 I
Eucgr.D02182 Eucalyptus grandis Eucgr.D02182 I
Ciclev10031966m.g Citrus clementina Ciclev10031966m.g I
Carubv10028284m.g Capsella rubella Carubv10028284m.g I
Carubv10007390m.g Capsella rubella Carubv10007390m.g I
Cagra.3356s0092 Capsella grandiflora Cagra.3356s0092 I
Cagra.0569s0030 Capsella grandiflora Cagra.0569s0030 I
Bostr.4485s0006 Boechera stricta Bostr.4485s0006 I
Bostr.30275s0267 Boechera stricta Bostr.30275s0267 I
Aquca_044_00122 Aquilegia coerulea Aquca_044_00122 I
mgf019012m Mimulus guttatus mgf019012m I
Cucsa.313350 Cucumis sativus Cucsa.313350 I
evm.TU.supercontig_90.52 Carica papaya evm.TU.supercontig_90.52 I
29827.m002555 Ricinus communis 29827.m002555 I
Pm023277 Prunus mume Pm023277 I
Cla016424 Citrullus lanatus Cla016424 I
Ca_12837 Cicer arietinum Ca_12837 I
Ca_02274 Cicer arietinum Ca_02274 I
VIT_02s0012g01040 Vitis vinifera VIT_02s0012g01040 I
TRIUR3_22131 Triticum urartu TRIUR3_22131 I
Traes_1BL_8925B27BC Triticum aestivum Traes_1BL_8925B27BC I
MDP0000936269 Malus domestica MDP0000936269 I
chr2.CM0021.650.nc Lotus japonicus chr2.CM0021.650.nc I
PK00339.1 Cannabis sativa PK00339.1 I
Thhalv10027064m.g Eutrema salsugineum Thhalv10027064m.g I
Thhalv10001200m.g Eutrema salsugineum Thhalv10001200m.g I
SapurV1A.0900s0060 Salix purpurea SapurV1A.0900s0060 I
SapurV1A.0846s0080 Salix purpurea SapurV1A.0846s0080 I
Pavir.Ib02435 Panicum virgatum Pavir.Ib02435 I
Pavir.Ia03491 Panicum virgatum Pavir.Ia03491 I
orange1.1g018835m.g Citrus sinensis orange1.1g018835m.g I
Eucgr.E00298 Eucalyptus grandis Eucgr.E00298 I
MDP0000119446 Malus domestica MDP0000119446 I
Lus10035373.g Linum usitatissimum Lus10035373.g I
Lus10030978.g Linum usitatissimum Lus10030978.g I
Gorai.008G227800 Gossypium raimondii Gorai.008G227800 I
Gorai.007G031300 Gossypium raimondii Gorai.007G031300 I
Gorai.004G186700 Gossypium raimondii Gorai.004G186700 I
Gorai.003G180600 Gossypium raimondii Gorai.003G180600 I
gene10722-v1.0-hybrid Fragaria vesca gene10722-v1.0-hybrid I
TCM_015749 Theobroma cacao TCM_015749 I
Bra025012 Brassica rapa Bra025012 I
LPERR10G15090 Leersia perrieri LPERR10G15090 I
GSMUA_Achr5G03360_001 Musa acuminata GSMUA_Achr5G03360_001 I
GSMUA_Achr11G17780_001 Musa acuminata GSMUA_Achr11G17780_001 I
GRMZM2G082709 Zea mays GRMZM2G082709 I
GLYMA17G16500 Glycine max GLYMA17G16500 I
GLYMA05G23840 Glycine max GLYMA05G23840 I
anac096 Arabidopsis lyrata fgenesh2_kg.8__135__AT5G46590.1 I
F775_28577 Aegilops tauschii F775_28577 I
BRADI3G33957 Brachypodium distachyon BRADI3G33957 I
MLOC_58950 Hordeum vulgare MLOC_58950 I
Bra022046 Brassica rapa Bra022046 I
Bra013272 Brassica rapa Bra013272 I
Bra012626 Brassica rapa Bra012626 I
Bo7g105630 Brassica oleracea Bo7g105630 I
Bo7g075540 Brassica oleracea Bo7g075540 I
Bo2g130240 Brassica oleracea Bo2g130240 I
Bo1g019130 Brassica oleracea Bo1g019130 I
BGIOSGA033482 Oryza indica BGIOSGA033482 I
AMTR_s00149p00068500 Amborella trichopoda AMTR_s00149p00068500 I
ORGLA10G0144100 Oryza glaberrima ORGLA10G0144100 I
anac071 Arabidopsis lyrata Al_scaffold_0007_2395 I
Solyc08g077110.2 Solanum lycopersicum Solyc08g077110.2 I
Solyc06g061080.2 Solanum lycopersicum Solyc06g061080.2 I
Si036301m.g Setaria italica Si036301m.g I
Sb01g028450 Sorghum bicolor Sb01g028450 I
POPTR_0003s08830 Populus trichocarpa POPTR_0003s08830 I
POPTR_0001s02710 Populus trichocarpa POPTR_0001s02710 I
PGSC0003DMG400017505 Solanum tuberosum PGSC0003DMG400017505 I
ORUFI10G20470 Oryza rufipogon ORUFI10G20470 I
Traes_1AL_D6C49C3BC Triticum aestivum Traes_1AL_D6C49C3BC I
OPUNC10G17630 Oryza punctata OPUNC10G17630 I
ONIVA10G21790 Oryza nivara ONIVA10G21790 I
OMERI07G08100 Oryza meridionalis OMERI07G08100 I
OLONG_018722 Oryza longistaminata OLONG_018722 I
OGLUM10G19330 Oryza glumaepatula OGLUM10G19330 I
OBART10G19230 Oryza barthii OBART10G19230 I
OB10G26350 Oryza brachyantha OB10G26350 I
MTR_5g014300 Medicago truncatula MTR_5g014300 I
MTR_4g098630 Medicago truncatula MTR_4g098630 I