DEL2 (Arabidopsis lyrata)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02319 (E2F_TDP) IPR003316 Al_scaffold_0006_1397 T172278_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.971 0.971
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.971 0.971
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.971 0.971
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.971 0.971
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.662 0.662
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.662 0.662
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.662 0.662
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.537 0.537
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.537 0.537
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.537 0.537
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.537 0.537
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.537 0.537
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.537 0.537
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.500 0.500
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.500 0.500
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.500 0.500
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0006_1397 E2F 12 76
Al_scaffold_0006_1397 E2F 137 215

Links

Other E2F family TFs
Other Arabidopsis lyrata TFs

317 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
dimm Drosophila melanogaster FBgn0023091 D
estExt_fgenesh2_pg.C_2400032 Branchiostoma floridae estExt_fgenesh2_pg.C_2400032 I
AALB000262 Anopheles albimanus AALB000262 I
LDEC018804 Leptinotarsa decemlineata LDEC018804 I
LCUP013558 Lucilia cuprina LCUP013558 I
HHAL006119-PA Halyomorpha halys HHAL006119-PA I
CLEC012303 Cimex lectularius CLEC012303 I
CLEC008492 Cimex lectularius CLEC008492 I
Sakowv30016776m.g Saccoglossus kowalevskii Sakowv30016776m.g I
Ocbimv22004730m.g Octopus bimaculoides Ocbimv22004730m.g I
AARA009464 Anopheles arabiensis AARA009464 I
Hsal_06132--XP_001121050.1_APIME Harpegnathos saltator Hsal_06132--XP_001121050.1_APIME I
Cflo_09823--XP_001121050.1_APIME Camponotus floridanus Cflo_09823--XP_001121050.1_APIME I
Cflo_05077--XP_624468.1_APIME Camponotus floridanus Cflo_05077--XP_624468.1_APIME I
YQE_07035 Dendroctonus ponderosae YQE_07035 I
tetur09g04370 Tetranychus urticae tetur09g04370 I
TC006222 Tribolium castaneum TC006222 I
SMAR011224 Strigamia maritima SMAR011224 I
SINV24225 Solenopsis invicta SINV24225 I
AFUN009249 Anopheles funestus AFUN009249 I
MDOA007359 Musca domestica MDOA007359 I
BGLB006797 Biomphalaria glabrata BGLB006797 I
ASTEI01901 Anopheles stephensi ASTEI01901 I
ASIS012186 Anopheles sinensis ASIS012186 I
AQUA011502 Anopheles quadriannulatus AQUA011502 I
AMIN001682 Anopheles minimus AMIN001682 I
AMEM000284 Anopheles merus AMEM000284 I
AMEC020491 Anopheles melas AMEC020491 I
RPRC000986 Rhodnius prolixus RPRC000986 I
AFAF012456 Anopheles farauti AFAF012456 I
AEPI003166 Anopheles epiroticus AEPI003166 I
ADIR000678 Anopheles dirus ADIR000678 I
ACUA018540 Anopheles culicifacies ACUA018540 I
ACOM040689 Anopheles coluzzii ACOM040689 I
ACHR010105 Anopheles christyi ACHR010105 I
AATE002862 Anopheles atroparvus AATE002862 I
CPIJ010025 Culex quinquefasciatus CPIJ010025 I
GL26661 Drosophila persimilis FBgn0164242 I
GI12220 Drosophila mojavensis FBgn0134977 I
GH13314 Drosophila grimshawi FBgn0120790 I
GG21298 Drosophila erecta FBgn0113477 I
GF14327 Drosophila ananassae FBgn0091354 I
GA21247 Drosophila pseudoobscura FBgn0081235 I
ENSXMAG00000014837 Xiphophorus maculatus ENSXMAG00000014837 I
ENSAMXG00000025873 Astyanax mexicanus ENSAMXG00000025873 I
GD24318 Drosophila simulans FBgn0195665 I
CGI_10020332 Crassostrea gigas CGI_10020332 I
CapteG206308 Capitella teleta CapteG206308 I
BGIBMGA007303 Bombyx mori BGIBMGA007303 I
AGAP028176 Anopheles gambiae AGAP028176 I
ACYPI32959 Acyrthosiphon pisum ACYPI32959 I
ACYPI000273 Acyrthosiphon pisum ACYPI000273 I
AAEL012662 Aedes aegypti AAEL012662 I
KGM_17543 Danaus plexippus KGM_17543 I
PHUM567140 Pediculus humanus PHUM567140 I
NV21702 Nasonia vitripennis NV21702 I
NV10548 Nasonia vitripennis NV10548 I
MESCA005415 Megaselia scalaris MESCA005415 I
MCINX009496 Melitaea cinxia MCINX009496 I
LotgiG98055 Lottia gigantea LotgiG98055 I
L798_12706 Zootermopsis nevadensis L798_12706 I
L798_11629 Zootermopsis nevadensis L798_11629 I
CpipJ_CPIJ010025 Culex pipiens CpipJ_CPIJ010025 I
HMEL004962 Heliconius melpomene HMEL004962 I
GB47718 Apis mellifera GB47718 I
GB44356 Apis mellifera GB44356 I
GE12913 Drosophila yakuba FBgn0230628 I
GK18738 Drosophila willistoni FBgn0220736 I
GJ17849 Drosophila virilis FBgn0205017 I
HelroG148428 Helobdella robusta HelroG148428 N