Ocbimv22038949m.g (Octopus bimaculoides)
EBF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF16422 (COE1_DBD) (none) Ocbimv22038949m.g T174845_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Ebf4
M10468_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_01 		0.824 0.824
EBF4
M10460_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF4_02 		0.824 0.824
Ebf1
M09045_2.00 		Mus musculus
DBYCCCWRGGGAV
BTCCCYWGGGRVH		 Misc
Kulakovskiy et al.(2013)
COE1_MOUSE.H11MO.0.A 		0.809 0.809
Ebf1
M09527_2.00 		Mus musculus
DBTCCCHDGGGA
TCCCHDGGGAVH		 Misc
Heinz et al.(2010)
proBcell-EBF_GSE21978 		0.809 0.809
EBF3
M10461_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$EBF_Q6 		0.809 0.809
Ebf1
M10469_2.00 		Mus musculus
VYMHVYYCYYBRGGGAVTHKHB
VDMDABTCCCYVRRGRRBDKRB		 Transfac
Matys et al.(2006)
V$OLF1_01 		0.809 0.809
kn
M03721_2.00 		Drosophila melanogaster
BWATTCCCHDGGGAATWV
BWATTCCCHDGGGAATWV		 SELEX
Nitta et al.(2015)
kn_1 		0.794 0.794
Ebf2
M10467_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_01 		0.779 0.779
EBF2
M10466_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$COE2_02 		0.779 0.779
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22038948m.p EBF1 24 91
Ocbimv22038949m.p EBF1 24 91
Ocbimv22038950m.p EBF1 24 91
Ocbimv22038951m.p EBF1 24 91

Links

Other EBF1 family TFs
Other Octopus bimaculoides TFs

137 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
L596_g19739 Steinernema carpocapsae L596_g19739 N
TCLT_0000237101 Thelazia callipaeda TCLT_0000237101 N
SVUK_0000031201 Strongylus vulgaris SVUK_0000031201 N
SVE_0910500 Strongyloides venezuelensis SVE_0910500 N
SSTP_0001223600 Strongyloides stercoralis SSTP_0001223600 N
scaffold198-EXSNAP2012.12 Pristionchus exspectatus scaffold198-EXSNAP2012.12 N
RSKR_0000760200 Rhabditophanes kr3021 RSKR_0000760200 N
PTRK_0001622300 Parastrongyloides trichosuri PTRK_0001622300 N
PEQ_0000498301 Parascaris equorum PEQ_0000498301 N
OFLC_0001424701 Onchocerca flexuosa OFLC_0001424701 N
OESDEN_14708 Oesophagostomum dentatum OESDEN_14708 N
nOo.2.0.1.g00297 Onchocerca ochengi nOo.2.0.1.g00297 N
nDi.2.2.2.g03160 Dirofilaria immitis nDi.2.2.2.g03160 N
L893_g8389 Steinernema glaseri L893_g8389 N
L892_g30928 Steinernema scapterisci L892_g30928 N
L889_g19003 Steinernema feltiae L889_g19003 N
Bm3100 Brugia malayi Bm3100 N
GPUH_0001426001 Gongylonema pulchrum GPUH_0001426001 N
DICVIV_01724 Dictyocaulus viviparus DICVIV_01724 N
BTMF_0001372201 Brugia timori BTMF_0001372201 N
ASU_11830 Ascaris suum ASU_11830 N
ASIM_0001118301 Anisakis simplex ASIM_0001118301 N
ANCDUO_12692 Ancylostoma duodenale ANCDUO_12692 N
ANCCEY_11381 Ancylostoma ceylanicum ANCCEY_11381 N
WBGene00247746 Onchocerca volvulus WBGene00247746 N
nhr-19 Caenorhabditis elegans WBGene00003618 N
LOAG_04530 Loa loa LOAG_04530 N
CRE20463 Caenorhabditis remanei CRE20463 N
CJA09664 Caenorhabditis japonica CJA09664 N
CBN15046 Caenorhabditis brenneri CBN15046 N
CBG24087 Caenorhabditis briggsae CBG24087 N