CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SPDEF
(
Tetraodon nigroviridis
)
Ets
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00178 (Ets)
IPR000418
ENSTNIG00000001703
T177121_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SPDEF
M02973_2.00
Homo sapiens
AMCCGGATRTD
HAYATCCGGKT
SELEX
Jolma et al.(2013)
SPDEF_1
0.995
0.938
SPDEF
M02974_2.00
Homo sapiens
ATRATCCGGGAMMHY
RDKKTCCCGGATYAT
SELEX
Jolma et al.(2013)
SPDEF_2
0.995
0.938
SPDEF
M02975_2.00
Homo sapiens
RCAGDAAGAAGTAWWM
KWWTACTTCTTHCTGY
SELEX
Jolma et al.(2013)
SPDEF_3
0.995
0.938
SPDEF
M02976_2.00
Homo sapiens
AMCCGGATRTD
HAYATCCGGKT
SELEX
Jolma et al.(2013)
SPDEF_4
0.995
0.938
SPDEF
M02977_2.00
Homo sapiens
WTRATCCGGGACCMC
GKGGTCCCGGATYAW
SELEX
Jolma et al.(2013)
SPDEF_5
0.995
0.938
SPDEF
M02978_2.00
Homo sapiens
RCAGDAAGAMGTAWHM
KDWTACKTCTTHCTGY
SELEX
Jolma et al.(2013)
SPDEF_6
0.995
0.938
SPDEF
M04748_2.00
Homo sapiens
NWVCCGGATRYN
NRYATCCGGBWN
SELEX
Yin et al.(2017)
SPDEF_eDBD_HT-SELEX
0.995
0.938
SPDEF
M04750_2.00
Homo sapiens
NWVCCGGATRYN
NRYATCCGGBWN
SELEX
Yin et al.(2017)
SPDEF_FL_HT-SELEX
0.995
0.938
SPDEF
M09530_2.00
Homo sapiens
WVCMGGAWVY
RBWTCCKGBW
Misc
Heinz et al.(2010)
VCaP-SPDEF_SRA014231
0.995
0.938
SPDEF
M04749_2.00
Homo sapiens
NAVCMGGATRYD
HRYATCCKGBTN
SELEX
Yin et al.(2017)
SPDEF_eDBD_Methyl-HT-SELEX
0.995
0.938
SPDEF
M04751_2.00
Homo sapiens
NAVCMGKATRYD
HRYATMCKGBTN
SELEX
Yin et al.(2017)
SPDEF_FL_Methyl-HT-SELEX
0.995
0.938
Spdef
M00159_2.00
Mus musculus
NNVMGGAHNN
NNDTCCKBNN
PBM
Badis et al.(2009)
Spdef_0905
0.994
0.926
Spdef
M01488_2.00
Mus musculus
NDNVMGGAHN
NDTCCKBNHN
PBM
Wei et al.(2010)
Spdef
0.994
0.926
Ets98B
M03727_2.00
Drosophila melanogaster
TAMCGGATGCN
NGCATCCGKTA
SELEX
Nitta et al.(2015)
Ets98B_1
0.979
0.728
Ets98B
M03728_2.00
Drosophila melanogaster
TKGCGGATGCN
NGCATCCGCMA
SELEX
Nitta et al.(2015)
Ets98B_2
0.979
0.728
Ets98B
M03729_2.00
Drosophila melanogaster
ATGATCCGGGACN
NGTCCCGGATCAT
SELEX
Nitta et al.(2015)
Ets98B_3
0.979
0.728
Ets98B
M03730_2.00
Drosophila melanogaster
GSATMCGKTA
TAMCGKATSC
SELEX
Nitta et al.(2015)
Ets98B_4
0.979
0.728
Ets98B
M03731_2.00
Drosophila melanogaster
ATGATCCGGGASN
NSTCCCGGATCAT
SELEX
Nitta et al.(2015)
Ets98B_5
0.979
0.728
Ets98B
M06191_2.00
Drosophila melanogaster
ASCCGGAWC
GWTCCGGST
B1H
Zhu et al.(2011)
Ets98B_SANGER_10_FBgn0005659
0.979
0.728
Elf2
M01494_2.00
Mus musculus
NNVMGGAAVH
DBTTCCKBNN
PBM
Wei et al.(2010)
Elf2
0.803
0.494
ELF2
M04722_2.00
Homo sapiens
NWHSCGGAAGTN
NACTTCCGSDWN
SELEX
Yin et al.(2017)
ELF2_eDBD_HT-SELEX_1
0.803
0.494
ELF2
M04723_2.00
Homo sapiens
DRBSCGGAAGTD
HACTTCCGSVYH
SELEX
Yin et al.(2017)
ELF2_eDBD_HT-SELEX_2
0.803
0.494
ELF2
M04726_2.00
Homo sapiens
NAMCCGGAAGTV
BACTTCCGGKTN
SELEX
Yin et al.(2017)
ELF2_FL_HT-SELEX_1
0.803
0.494
ELF2
M04727_2.00
Homo sapiens
DAYSCGGAAGTR
YACTTCCGSRTH
SELEX
Yin et al.(2017)
ELF2_FL_HT-SELEX_2
0.803
0.494
ELF2
M09049_2.00
Homo sapiens
NDVSCGGAAGYVV
BBRCTTCCGSBHN
Misc
Kulakovskiy et al.(2013)
ELF2_HUMAN.H11MO.0.C
0.803
0.494
Elf2
M09080_2.00
Mus musculus
YDNCAGGAAGBRRVK
MBYYVCTTCCTGNHR
Misc
Kulakovskiy et al.(2013)
ELF2_MOUSE.H11MO.0.C
0.803
0.494
ELF2
M10480_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NERF_Q2
0.803
0.494
ELF2
M04724_2.00
Homo sapiens
NWHCMGGAAGTR
YACTTCCKGDWN
SELEX
Yin et al.(2017)
ELF2_eDBD_Methyl-HT-SELEX_1
0.803
0.494
ELF2
M04725_2.00
Homo sapiens
DANVCGGAAGTD
HACTTCCGBNTH
SELEX
Yin et al.(2017)
ELF2_eDBD_Methyl-HT-SELEX_2
0.803
0.494
ELF2
M04728_2.00
Homo sapiens
AAMCMGGAAGTR
YACTTCCKGKTT
SELEX
Yin et al.(2017)
ELF2_FL_Methyl-HT-SELEX_1
0.803
0.494
ELF2
M04729_2.00
Homo sapiens
RAYSMGGAAGTR
YACTTCCKSRTT
SELEX
Yin et al.(2017)
ELF2_FL_Methyl-HT-SELEX_2
0.803
0.494
Eip74EF
M03723_2.00
Drosophila melanogaster
WACCCGGAAGTR
YACTTCCGGGTW
SELEX
Nitta et al.(2015)
Eip74EF_1
0.761
0.531
Eip74EF
M03724_2.00
Drosophila melanogaster
WABSCGGAAGTR
YACTTCCGSVTW
SELEX
Nitta et al.(2015)
Eip74EF_2
0.761
0.531
Eip74EF
M06186_2.00
Drosophila melanogaster
WHMAGGAAKT
AMTTCCTKDW
B1H
Zhu et al.(2011)
Eip74EF_FlyReg_FBgn0000567
0.761
0.531
Eip74EF
M06187_2.00
Drosophila melanogaster
ACCCGGAAGT
ACTTCCGGGT
B1H
Zhu et al.(2011)
Eip74EF_SANGER_5_FBgn0000567
0.761
0.531
Eip74EF
M02679_2.00
Drosophila melanogaster
CMGGAAR
YTTCCKG
SELEX
Mathelier et al.(2014)
MA0026.1
0.761
0.531
Eip74EF
M09667_2.00
Drosophila melanogaster
VWHMMGGAART
AYTTCCKKDWB
Misc
Kulakovskiy et al.(2009)
Eip74EF
0.761
0.531
Eip74EF
M10521_2.00
Drosophila melanogaster
NNAAYCMGGAARTNNDV
BHNNAYTTCCKGRWTNN
Transfac
Matys et al.(2006)
I$E74A_01
0.761
0.531
ELF1
M02971_2.00
Homo sapiens
DACCCGGAAGTV
BACTTCCGGGTH
SELEX
Jolma et al.(2013)
ELF1_1
0.760
0.494
ELF1
M02972_2.00
Homo sapiens
WACCCGGAAGTR
YACTTCCGGGTW
SELEX
Jolma et al.(2013)
ELF1_2
0.760
0.494
ELF1
M04740_2.00
Homo sapiens
NWHSCGGAAGYN
NRCTTCCGSDWN
SELEX
Yin et al.(2017)
ELF1_eDBD_HT-SELEX_1
0.760
0.494
ELF1
M04741_2.00
Homo sapiens
NDBVCGGAAGTN
NACTTCCGBVHN
SELEX
Yin et al.(2017)
ELF1_eDBD_HT-SELEX_2
0.760
0.494
ELF1
M04744_2.00
Homo sapiens
NWHSCGGAAGYN
NRCTTCCGSDWN
SELEX
Yin et al.(2017)
ELF1_FL_HT-SELEX_1
0.760
0.494
ELF1
M04745_2.00
Homo sapiens
DWBVCGGAAGTD
HACTTCCGBVWH
SELEX
Yin et al.(2017)
ELF1_FL_HT-SELEX_2
0.760
0.494
ELF1
M07947_2.00
Homo sapiens
VVVDSSCGGAAGYSS
SSRCTTCCGSSHBBB
ChIP-seq
Gerstein et al.(2012)
GM12878_ELF1_HudsonAlpha
0.760
0.494
ELF1
M07948_2.00
Homo sapiens
NVDVSCGGAAGYVV
BBRCTTCCGSBHBN
ChIP-seq
Gerstein et al.(2012)
HepG2_ELF1_HudsonAlpha
0.760
0.494
ELF1
M07949_2.00
Homo sapiens
DVSCGGAAGYG
CRCTTCCGSBH
ChIP-seq
Gerstein et al.(2012)
K562_ELF1_HudsonAlpha
0.760
0.494
ELF1
M08198_2.00
Homo sapiens
WCCCGGAAGY
RCTTCCGGGW
ChIP-seq
Contrino et al.(2012)
Mv63
0.760
0.494
ELF1
M09050_2.00
Homo sapiens
VVWNSMGGAAGYVS
SBRCTTCCKSNWBB
Misc
Kulakovskiy et al.(2013)
ELF1_HUMAN.H11MO.0.A
0.760
0.494
Elf1
M09079_2.00
Mus musculus
VVDVSCGGAAGYVV
BBRCTTCCGSBHBB
Misc
Kulakovskiy et al.(2013)
ELF1_MOUSE.H11MO.0.A
0.760
0.494
ELF1
M09529_2.00
Homo sapiens
NVCCGGAAGY
RCTTCCGGBN
Misc
Heinz et al.(2010)
Jurkat-ELF1_SRA014231
0.760
0.494
ELF1
M10483_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ELF1_03
0.760
0.494
ELF1
M10484_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ELF1_07
0.760
0.494
ELF1
M10485_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ELF1_Q4
0.760
0.494
ELF1
M10486_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ELF1_Q5
0.760
0.494
ELF1
M10487_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ELF1_Q6
0.760
0.494
ELF1
M04742_2.00
Homo sapiens
NWNSMGGAAGTR
YACTTCCKSNWN
SELEX
Yin et al.(2017)
ELF1_eDBD_Methyl-HT-SELEX_1
0.760
0.494
ELF1
M04743_2.00
Homo sapiens
DDNVMGGAAGTR
YACTTCCKBNHH
SELEX
Yin et al.(2017)
ELF1_eDBD_Methyl-HT-SELEX_2
0.760
0.494
ELF1
M04746_2.00
Homo sapiens
NWHCMGGAAGTN
NACTTCCKGDWN
SELEX
Yin et al.(2017)
ELF1_FL_Methyl-HT-SELEX_1
0.760
0.494
ELF1
M04747_2.00
Homo sapiens
DABSCGGAAGTR
YACTTCCGSVTH
SELEX
Yin et al.(2017)
ELF1_FL_Methyl-HT-SELEX_2
0.760
0.494
Elf4
M01492_2.00
Mus musculus
NNVMGGAAVH
DBTTCCKBNN
PBM
Wei et al.(2010)
Elf4
0.760
0.481
ELF4
M02966_2.00
Homo sapiens
DACCCGGAAGTR
YACTTCCGGGTH
SELEX
Jolma et al.(2013)
ELF4_1
0.760
0.481
ELF4
M04716_2.00
Homo sapiens
NWHSCGGAAGTN
NACTTCCGSDWN
SELEX
Yin et al.(2017)
ELF4_eDBD_HT-SELEX_1
0.760
0.481
ELF4
M04717_2.00
Homo sapiens
NABSCGGAAGTR
YACTTCCGSVTN
SELEX
Yin et al.(2017)
ELF4_eDBD_HT-SELEX_2
0.760
0.481
ELF4
M04718_2.00
Homo sapiens
NAHCMGGAAGTR
YACTTCCKGDTN
SELEX
Yin et al.(2017)
ELF4_eDBD_Methyl-HT-SELEX_1
0.760
0.481
ELF4
M04719_2.00
Homo sapiens
NANVMGGAAGTD
HACTTCCKBNTN
SELEX
Yin et al.(2017)
ELF4_eDBD_Methyl-HT-SELEX_2
0.760
0.481
For this family, TFs with SR scores >
0.717
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSTNIP00000002369
Ets
194
276
HLWQFLRELLLKPHNYSRCIRWLNKEKGIFKIEDSAHVARLWGIRKNRPAMNYDKLSRSIRQYYKKGIIRKPDVSRRLVYQFV
Links
Other
Ets
family TFs
Other
Tetraodon nigroviridis
TFs
507 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy