fgenesh2_pg.scaffold_40000035 (Branchiostoma floridae)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 fgenesh2_pg.scaffold_40000035 T181097_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_40000035 FAR1 38 120

Links

Other FAR1 family TFs
Other Branchiostoma floridae TFs

1 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF13 Arabidopsis thaliana AT2G44840 D
ERF098 Arabidopsis thaliana AT3G23230 D
ERF105 Arabidopsis thaliana AT5G51190 D
ERF2_TOBAC Nicotiana tabacum ERF2_TOBAC D
AMTR_s00009p00147970 Amborella trichopoda AMTR_s00009p00147970 I
AMTR_s00021p00185480 Amborella trichopoda AMTR_s00021p00185480 I
BGIOSGA004470 Oryza indica BGIOSGA004470 I
BGIOSGA008740 Oryza indica BGIOSGA008740 I
BGIOSGA015474 Oryza indica BGIOSGA015474 I
Bo4g024140 Brassica oleracea Bo4g024140 I
Bo4g195220 Brassica oleracea Bo4g195220 I
Bo9g001020 Brassica oleracea Bo9g001020 I
Bra004873 Brassica rapa Bra004873 I
Bra037630 Brassica rapa Bra037630 I
fgenesh2_kg.8__1005__AT5G51190.1 Arabidopsis lyrata fgenesh2_kg.8__1005__AT5G51190.1 I
GLYMA03G26437 Glycine max GLYMA03G26437 I
GLYMA03G26480 Glycine max GLYMA03G26480 I
GLYMA03G26520 Glycine max GLYMA03G26520 I
GLYMA10G00990 Glycine max GLYMA10G00990 I
GLYMA10G23440 Glycine max GLYMA10G23440 I
GLYMA10G33070 Glycine max GLYMA10G33070 I
GLYMA13G30710 Glycine max GLYMA13G30710 I
GLYMA13G30720 Glycine max GLYMA13G30720 I
GLYMA15G08560 Glycine max GLYMA15G08560 I
GLYMA15G08580 Glycine max GLYMA15G08580 I
GLYMA18G48730 Glycine max GLYMA18G48730 I
GLYMA18G48741 Glycine max GLYMA18G48741 I
GLYMA20G16910 Glycine max GLYMA20G16910 I
GLYMA20G34560 Glycine max GLYMA20G34560 I
GRMZM2G057386 Zea mays GRMZM2G057386 I
GSMUA_Achr6G00240_001 Musa acuminata GSMUA_Achr6G00240_001 I
LPERR02G21480 Leersia perrieri LPERR02G21480 I
LPERR04G03550 Leersia perrieri LPERR04G03550 I
MTR_1g074310 Medicago truncatula MTR_1g074310 I
MTR_2g015040 Medicago truncatula MTR_2g015040 I
MTR_2g015050 Medicago truncatula MTR_2g015050 I
MTR_4g088005 Medicago truncatula MTR_4g088005 I
MTR_7g081795 Medicago truncatula MTR_7g081795 I
MTR_7g081805 Medicago truncatula MTR_7g081805 I
MTR_7g081815 Medicago truncatula MTR_7g081815 I
MTR_8g006815 Medicago truncatula MTR_8g006815 I
MTR_8g006825 Medicago truncatula MTR_8g006825 I
MTR_8g006840 Medicago truncatula MTR_8g006840 I
OB04G14270 Oryza brachyantha OB04G14270 I
OBART02G26470 Oryza barthii OBART02G26470 I
OBART04G05450 Oryza barthii OBART04G05450 I
OGLUM02G26870 Oryza glumaepatula OGLUM02G26870 I
OGLUM04G04620 Oryza glumaepatula OGLUM04G04620 I
OLONG_027600 Oryza longistaminata OLONG_027600 I
OMERI01G28260 Oryza meridionalis OMERI01G28260 I
OMERI03G03710 Oryza meridionalis OMERI03G03710 I
ONIVA01G35550 Oryza nivara ONIVA01G35550 I
ONIVA02G28840 Oryza nivara ONIVA02G28840 I
ONIVA04G03680 Oryza nivara ONIVA04G03680 I
OPUNC01G30160 Oryza punctata OPUNC01G30160 I
OPUNC02G24090 Oryza punctata OPUNC02G24090 I
ORGLA02G0226700 Oryza glaberrima ORGLA02G0226700 I
ORGLA04G0041100 Oryza glaberrima ORGLA04G0041100 I
ORUFI01G34250 Oryza rufipogon ORUFI01G34250 I
ORUFI02G27860 Oryza rufipogon ORUFI02G27860 I
ORUFI04G06330 Oryza rufipogon ORUFI04G06330 I
OS01G0752500 Oryza sativa OS01G0752500 I
OS04G0257500 Oryza sativa OS04G0257500 I
PGSC0003DMG400010750 Solanum tuberosum PGSC0003DMG400010750 I
PGSC0003DMG400016006 Solanum tuberosum PGSC0003DMG400016006 I
POPTR_0001s11770 Populus trichocarpa POPTR_0001s11770 I
POPTR_0002s04430 Populus trichocarpa POPTR_0002s04430 I
POPTR_0003s07850 Populus trichocarpa POPTR_0003s07850 I
POPTR_0003s15030 Populus trichocarpa POPTR_0003s15030 I
POPTR_0004s05100 Populus trichocarpa POPTR_0004s05100 I
POPTR_0005s24110 Populus trichocarpa POPTR_0005s24110 I
POPTR_0005s24450 Populus trichocarpa POPTR_0005s24450 I
POPTR_0014s04600 Populus trichocarpa POPTR_0014s04600 I
POPTR_0014s04610 Populus trichocarpa POPTR_0014s04610 I
POPTR_0014s04630 Populus trichocarpa POPTR_0014s04630 I
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I
PRUPE_ppa010186mg Prunus persica PRUPE_ppa010186mg I
PRUPE_ppa012014mg Prunus persica PRUPE_ppa012014mg I
PRUPE_ppa016384mg Prunus persica PRUPE_ppa016384mg I
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I
PRUPE_ppa022435mg Prunus persica PRUPE_ppa022435mg I
PRUPE_ppa023698mg Prunus persica PRUPE_ppa023698mg I
PRUPE_ppa025748mg Prunus persica PRUPE_ppa025748mg I
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I
Sb03g034780 Sorghum bicolor Sb03g034780 I
ATERF13 Arabidopsis lyrata scaffold_403422.1 I
scaffold_604310.1 Arabidopsis lyrata scaffold_604310.1 I
SELMODRAFT_37123 Selaginella moellendorffii SELMODRAFT_37123 I
SELMODRAFT_68470 Selaginella moellendorffii SELMODRAFT_68470 I
SELMODRAFT_72880 Selaginella moellendorffii SELMODRAFT_72880 I
SELMODRAFT_73144 Selaginella moellendorffii SELMODRAFT_73144 I
SELMODRAFT_80895 Selaginella moellendorffii SELMODRAFT_80895 I
SELMODRAFT_86738 Selaginella moellendorffii SELMODRAFT_86738 I
Si017790m.g Setaria italica Si017790m.g I
Solyc03g093610.1 Solanum lycopersicum Solyc03g093610.1 I
Solyc05g052050.1 Solanum lycopersicum Solyc05g052050.1 I
TCM_005705 Theobroma cacao TCM_005705 I
TCM_005706 Theobroma cacao TCM_005706 I
TCM_005707 Theobroma cacao TCM_005707 I
TCM_014845 Theobroma cacao TCM_014845 I
TCM_014847 Theobroma cacao TCM_014847 I
TCM_029772 Theobroma cacao TCM_029772 I
TCM_029773 Theobroma cacao TCM_029773 I
TRAES3BF046300130CFD_g Triticum aestivum TRAES3BF046300130CFD_g I
VIT_10s0003g00580 Vitis vinifera VIT_10s0003g00580 I
VIT_16s0013g01000 Vitis vinifera VIT_16s0013g01000 I
VIT_16s0013g01090 Vitis vinifera VIT_16s0013g01090 I
VIT_16s0013g01110 Vitis vinifera VIT_16s0013g01110 I
VIT_16s0013g01120 Vitis vinifera VIT_16s0013g01120 I
Ca_00359 Cicer arietinum Ca_00359 I
Ca_02325 Cicer arietinum Ca_02325 I
Ca_06032 Cicer arietinum Ca_06032 I
Ca_06034 Cicer arietinum Ca_06034 I
Ca_12080 Cicer arietinum Ca_12080 I
Ca_12220 Cicer arietinum Ca_12220 I
Ca_17211 Cicer arietinum Ca_17211 I
Ca_23626 Cicer arietinum Ca_23626 I
Cla003677 Citrullus lanatus Cla003677 I
Cla021383 Citrullus lanatus Cla021383 I
Cla021851 Citrullus lanatus Cla021851 I
Pm003579 Prunus mume Pm003579 I
Pm010368 Prunus mume Pm010368 I
Pm017696 Prunus mume Pm017696 I
Pm017698 Prunus mume Pm017698 I
Pm017699 Prunus mume Pm017699 I
Pm017700 Prunus mume Pm017700 I
Pm019546 Prunus mume Pm019546 I
Pm020210 Prunus mume Pm020210 I
29900.m001559 Ricinus communis 29900.m001559 I
30147.m014331 Ricinus communis 30147.m014331 I
30174.m008755 Ricinus communis 30174.m008755 I
30174.m008756 Ricinus communis 30174.m008756 I
30174.m008759 Ricinus communis 30174.m008759 I
cassava1608.valid.m1 Manihot esculenta cassava1608.valid.m1 I
cassava19881.m1 Manihot esculenta cassava19881.m1 I
cassava19882.m1 Manihot esculenta cassava19882.m1 I
cassava19883.m1 Manihot esculenta cassava19883.m1 I
cassava3045.m1 Manihot esculenta cassava3045.m1 I
cassava41639.m1 Manihot esculenta cassava41639.m1 I
cassava47034.m1 Manihot esculenta cassava47034.m1 I
Cucsa.129320 Cucumis sativus Cucsa.129320 I
Cucsa.260030 Cucumis sativus Cucsa.260030 I
Cucsa.260040 Cucumis sativus Cucsa.260040 I
e_gw1.265.11.1 Physcomitrella patens e_gw1.265.11.1 I
e_gw1.487.2.1 Physcomitrella patens e_gw1.487.2.1 I
gw1.25.154.1 Physcomitrella patens gw1.25.154.1 I
mgf001695m Mimulus guttatus mgf001695m I
mgf020878m Mimulus guttatus mgf020878m I
mgf021215m Mimulus guttatus mgf021215m I
mgf023779m Mimulus guttatus mgf023779m I
Aquca_005_00139 Aquilegia coerulea Aquca_005_00139 I
Aquca_005_00143 Aquilegia coerulea Aquca_005_00143 I
Aquca_017_00628 Aquilegia coerulea Aquca_017_00628 I
Aquca_036_00073 Aquilegia coerulea Aquca_036_00073 I
Aquca_067_00006 Aquilegia coerulea Aquca_067_00006 I
Bostr.14547s0008 Boechera stricta Bostr.14547s0008 I
Bostr.15774s0261 Boechera stricta Bostr.15774s0261 I
Bostr.19424s0320 Boechera stricta Bostr.19424s0320 I
Bostr.26833s0076 Boechera stricta Bostr.26833s0076 I
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I
Cagra.0542s0055 Capsella grandiflora Cagra.0542s0055 I
Cagra.3782s0036 Capsella grandiflora Cagra.3782s0036 I
Cagra.4714s0001 Capsella grandiflora Cagra.4714s0001 I
Cagra.8559s0002 Capsella grandiflora Cagra.8559s0002 I
Carubv10005868m.g Capsella rubella Carubv10005868m.g I
Carubv10015406m.g Capsella rubella Carubv10015406m.g I
Carubv10023967m.g Capsella rubella Carubv10023967m.g I
Carubv10027063m.g Capsella rubella Carubv10027063m.g I
Carubv10028209m.g Capsella rubella Carubv10028209m.g I
Ciclev10016995m.g Citrus clementina Ciclev10016995m.g I
Ciclev10018130m.g Citrus clementina Ciclev10018130m.g I
Ciclev10021132m.g Citrus clementina Ciclev10021132m.g I
Ciclev10021285m.g Citrus clementina Ciclev10021285m.g I
Ciclev10022025m.g Citrus clementina Ciclev10022025m.g I
Eucgr.A02924 Eucalyptus grandis Eucgr.A02924 I
Eucgr.E00377 Eucalyptus grandis Eucgr.E00377 I
Eucgr.E00378 Eucalyptus grandis Eucgr.E00378 I
Eucgr.E01561 Eucalyptus grandis Eucgr.E01561 I
Eucgr.E01571 Eucalyptus grandis Eucgr.E01571 I
Eucgr.E02651 Eucalyptus grandis Eucgr.E02651 I
Eucgr.E02652 Eucalyptus grandis Eucgr.E02652 I
Eucgr.E03167 Eucalyptus grandis Eucgr.E03167 I
Eucgr.E03168 Eucalyptus grandis Eucgr.E03168 I
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I
Eucgr.G00388 Eucalyptus grandis Eucgr.G00388 I
Eucgr.G00390 Eucalyptus grandis Eucgr.G00390 I
Eucgr.G00391 Eucalyptus grandis Eucgr.G00391 I
Eucgr.G00392 Eucalyptus grandis Eucgr.G00392 I
Eucgr.G00393 Eucalyptus grandis Eucgr.G00393 I
Eucgr.G00394 Eucalyptus grandis Eucgr.G00394 I
Eucgr.G00396 Eucalyptus grandis Eucgr.G00396 I
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I
Eucgr.G00943 Eucalyptus grandis Eucgr.G00943 I
evm.TU.supercontig_101.15 Carica papaya evm.TU.supercontig_101.15 I
evm.TU.supercontig_7.36 Carica papaya evm.TU.supercontig_7.36 I
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I
gene04916-v1.0-hybrid Fragaria vesca gene04916-v1.0-hybrid I
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I
gene16619-v1.0-hybrid Fragaria vesca gene16619-v1.0-hybrid I
gene21165-v1.0-hybrid Fragaria vesca gene21165-v1.0-hybrid I
Gorai.001G051300 Gossypium raimondii Gorai.001G051300 I
Gorai.003G112200 Gossypium raimondii Gorai.003G112200 I
Gorai.004G070500 Gossypium raimondii Gorai.004G070500 I
Gorai.004G070600 Gossypium raimondii Gorai.004G070600 I
Gorai.004G070700 Gossypium raimondii Gorai.004G070700 I
Gorai.004G070800 Gossypium raimondii Gorai.004G070800 I
Gorai.004G165800 Gossypium raimondii Gorai.004G165800 I
Gorai.007G046000 Gossypium raimondii Gorai.007G046000 I
Gorai.007G086000 Gossypium raimondii Gorai.007G086000 I
Gorai.008G108400 Gossypium raimondii Gorai.008G108400 I
Gorai.008G108500 Gossypium raimondii Gorai.008G108500 I
Gorai.008G213900 Gossypium raimondii Gorai.008G213900 I
Gorai.008G214000 Gossypium raimondii Gorai.008G214000 I
Gorai.009G165400 Gossypium raimondii Gorai.009G165400 I
Gorai.009G165500 Gossypium raimondii Gorai.009G165500 I
Lus10005281.g Linum usitatissimum Lus10005281.g I
Lus10013958.g Linum usitatissimum Lus10013958.g I
Lus10016209.g Linum usitatissimum Lus10016209.g I
Lus10016210.g Linum usitatissimum Lus10016210.g I
Lus10016212.g Linum usitatissimum Lus10016212.g I
Lus10025430.g Linum usitatissimum Lus10025430.g I
Lus10029331.g Linum usitatissimum Lus10029331.g I
MDP0000122665 Malus domestica MDP0000122665 I
MDP0000133485 Malus domestica MDP0000133485 I
MDP0000135205 Malus domestica MDP0000135205 I
MDP0000153445 Malus domestica MDP0000153445 I
MDP0000178398 Malus domestica MDP0000178398 I
MDP0000189033 Malus domestica MDP0000189033 I
MDP0000236605 Malus domestica MDP0000236605 I
MDP0000310904 Malus domestica MDP0000310904 I
MDP0000317950 Malus domestica MDP0000317950 I
MDP0000457509 Malus domestica MDP0000457509 I
MDP0000517257 Malus domestica MDP0000517257 I
MDP0000689946 Malus domestica MDP0000689946 I
MDP0000805422 Malus domestica MDP0000805422 I
MDP0000830129 Malus domestica MDP0000830129 I
MDP0000907929 Malus domestica MDP0000907929 I
MDP0000930655 Malus domestica MDP0000930655 I
orange1.1g031071m.g Citrus sinensis orange1.1g031071m.g I
orange1.1g037347m.g Citrus sinensis orange1.1g037347m.g I
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I
orange1.1g047100m.g Citrus sinensis orange1.1g047100m.g I
orange1.1g047334m.g Citrus sinensis orange1.1g047334m.g I
Pavir.Aa01181 Panicum virgatum Pavir.Aa01181 I
Pavir.Ab02473 Panicum virgatum Pavir.Ab02473 I
Pavir.Ea03031 Panicum virgatum Pavir.Ea03031 I
Pavir.Eb03148 Panicum virgatum Pavir.Eb03148 I
SapurV1A.0012s0890 Salix purpurea SapurV1A.0012s0890 I
SapurV1A.0094s0620 Salix purpurea SapurV1A.0094s0620 I
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I
SapurV1A.0233s0380 Salix purpurea SapurV1A.0233s0380 I
SapurV1A.1065s0020 Salix purpurea SapurV1A.1065s0020 I
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I
Thhalv10014591m.g Eutrema salsugineum Thhalv10014591m.g I
Thhalv10029212m.g Eutrema salsugineum Thhalv10029212m.g I
PK28774.1 Cannabis sativa PK28774.1 I
chr3.CM0080.190.nd Lotus japonicus chr3.CM0080.190.nd I
chr3.CM0080.200.nd Lotus japonicus chr3.CM0080.200.nd I
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I
chr3.CM0080.80.nd Lotus japonicus chr3.CM0080.80.nd I
CM0905.90.nd Lotus japonicus CM0905.90.nd I
CM1489.100.nc Lotus japonicus CM1489.100.nc I
CM1489.90.nc Lotus japonicus CM1489.90.nc I
LjSGA_078116.1 Lotus japonicus LjSGA_078116.1 I
PDK_20s1325661g001 Phoenix dactylifera PDK_20s1325661g001 I